Gene detail

Detail information of GWHGAAZE021845

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99277.1	0	unnamed protein product [Coffea canephora]
COG	NP_715644.1	0.0000004	glutathione uptake transporter
Swissprot	tr\|Q9FNL7\|PTR3_ARATH	0	Protein NRT1/ PTR FAMILY 5.2
trEMBL	tr\|A0A068TTB8\|A0A068TTB8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99277.1}
TAIR10	AT5G46050.1	6E-157	peptide transporter 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	62394929	62396848	-
GWHAAZE00000006	mRNA	62394929	62396848	-
GWHAAZE00000006	exon	62394929	62395967	-
GWHAAZE00000006	exon	62396286	62396848	-
GWHAAZE00000006	CDS	62396286	62396848	-
GWHAAZE00000006	CDS	62394929	62395967	-

Transcript Sequence
>GWHTAAZE021871 ATGGGCCTACTAACTCTAGCAGTTTCAGTCCCCGGACTACGGCCGCCCCACTGTGTGGCATCCGATCCAGCTGACTGCCCAAAGCCCACCAACACAGAATTGATTCTGTTTTATGCTGCACTCTACATCCTAGCCCTTGGGGCCGGAGGTACAAAGCCGAACATCTCGACCATTGGTGCGGATCAATTCAACGATTTCGACCCTAAAGAGAAAGCCCAAAAGCTCTCATTTTTCAACTGGTGGATGTTTACTGTTTTCTTTGGGAAATTATTTGGGGACACAATTCTTGTGTATGTACAAGACAATGTGGGTTGGGGCTTGGGCTATGGGCTACCCACTCTTGGGCTGGTCTTAGGCATTATGAGCTTTTTGATTGGGACACCATTTTATAGGCACAAAAAGCCCACAGGGAGTCCCTTCACAAGAATGGCTAGAGTTATTGTGGCTGCCCTTAGAAAAAGGGAGGTGGTTGTGCCCAGTGAGACCAAAGAACTGTATGAGGTTCATTTGGAAGAATATACCAAGAAAGGAAAATTCAAAATTGATTCTACACCATCCTTGAGAGGAAAATGTGCGCATGTGCGGACATACATGTGCGGACATATATATATATATATATATTAATTTTTCATTACATCACTTTAATTTAGATTGAATTTATTGATAAAAATTTATGGAGATGATTGACAACAATGTAGGTTCCTCAATAAAGCTTGCGTAGAAACAGGATCAAAGAATCCATGGATGCTCTGCTCAGTGACTGAAGTTGAAGAAACCAAGCAGATGCTAAGAATGATCCCAATCTTGATCACCATGTTTCTCCCAAGTGTAATGGTTTCACAAACCCACACCCTTTTCGTCAAGCAAGCCACTACTCTTAACAAAAGCATCGGTGATCATTTCAAGTTTCCCCCAGCTAGCCTAGGCGCCTTTGTGACCGTGAGTATGCTCTTAAGTATCATAATTTATGACCGCGTCTTTGTCAAGATAATCCAAAAGTGGACTAAAAATCCCAGAGGCATCACTCTCCTCCAAAGGCTAGGAACAGGCCTTGCACTTCATATTCTCATTATGATAATTGCGTCCTTAACAGAGAAATACAGGCTCAGTACAGCCAAGAGACATGGGTTAGATGAAACAAAAGGACAAGTACCTTTGACCATCTTCATTTTGCTTCCTCAGTTTATCCTAATGGGAGTGTCGGACGCGTGTTCTGAGGTGGCTAAGATCGAATTTTTCTATGACCAAGCACCCGAAAGCATGAAAAGTATAGGGACTTCTTATTCCATGACTAGTTATGGAGTAGGAAACTTTCTTAGTTCCGCTATCCTCTCTACCGTTTCTCACATCACAAAGGAGAATGATCACAAAGGGTGGATCCAAAATAACCTTAATGCTTCTCGACTCGATTACTATTTCATGTTTCTTGCAATACTTAGTGCCATGAACTTTGTCTTCTTCTTGGTTGTTGCTAGGTATTATCAGTACAGGGCTGAAGTTTCGGATTCTATGGAAATACTTAAGGAAGAGTTGATGGGGACAAAATCTAAGGTACTTAATCAAGCGGAACTAAGTGCAGTTAATGGGTTTGGGGAAGATTAA

Network for GWHGAAZE021845

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0121

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.22	PTR2	3	456	1.40E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.098
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.079
	SRR3591710	White floral bud	0.069
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.076
SRP173429	SRR8316895	Juvenile bud stage	0.357
	SRR8316896	Juvenile bud stage	0.623
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.181
	SRR8316900	Third green stage	0.383
	SRR8316901	Third green stage	0.621
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.057
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.027
	SRR8316906	Gold flowering stage	0.008
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.382
	SRR6706287	Light intensity 50%	0.603
	SRR6706288	Light intensity 20%	0.630
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.048
	CNS0095593	Slightly white alabastrum(diploid) 2	0.090
	CNS0095594	Slightly white alabastrum(diploid) 3	0.227
	CNS0095595	Whole white alabastrum(diploid) 2	0.002
	CNS0095596	Whole white alabastrum(diploid) 3	0.097
	CNS0095597	Whole white alabastrum(diploid) 4	0.093
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.004
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.006
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.082
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.533
	CRR073298	Stem 2	0.782
	CRR073299	Stem 3	0.514
	CRR073300	Leaf 1	0.030
	CRR073301	Leaf 2	0.210
	CRR073302	Leaf 3	0.095
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.015
	CRR073320	Tawny withering 3	0.000