Detail information of GWHGAAZE021861


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009785361.11.9063E-110PREDICTED: peroxisomal membrane protein PMP22 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9ZS51|PMP22_ARATH3E-70Peroxisomal membrane protein PMP22
trEMBLtr|A5B7D3|A5B7D3_VITVI6E-109Putative uncharacterized protein {ECO:0000313|EMBL:CAN76530.1}
TAIR10AT4G14305.14E-65Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6269733462699446-
GWHAAZE00000006mRNA6269733462699446-
GWHAAZE00000006exon6269733462697462-
GWHAAZE00000006exon6269756262697632-
GWHAAZE00000006exon6269789462697969-
GWHAAZE00000006exon6269892262699023-
GWHAAZE00000006exon6269915262699250-
GWHAAZE00000006exon6269937562699446-
GWHAAZE00000006CDS6269937562699446-
GWHAAZE00000006CDS6269915262699250-
GWHAAZE00000006CDS6269892262699023-
GWHAAZE00000006CDS6269789462697969-
GWHAAZE00000006CDS6269756262697632-
GWHAAZE00000006CDS6269733462697462-
Transcript Sequence

Network for GWHGAAZE021861

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04117.13Mpv17_PMP221141696.00E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13347PXMP2, PMP22 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.605
SRR3591706second leaf2.745
SRR3591707mature leaf4.320
SRR3591708Shoot apex0.812
SRR3591709Stem5.904
SRR3591710White floral bud25.155
SRR3591711White flower19.395
SRR3591712Green floral bud28.123
SRR3591713Yellow flower12.357
SRP173429 SRR8316895Juvenile bud stage 35.215
SRR8316896Juvenile bud stage 45.544
SRR8316897Juvenile bud stage 21.133
SRR8316894Third green stage 22.657
SRR8316900Third green stage 90.956
SRR8316901Third green stage 78.917
SRR8316898Complete white stage 35.992
SRR8316899Complete white stage 93.714
SRR8316903Complete white stage 51.041
SRR8316902Silver flowering stage32.507
SRR8316904Silver flowering stage54.156
SRR8316905Silver flowering stage32.468
SRR8316906Gold flowering stage 62.169
SRR8316907Gold flowering stage 54.041
SRR8316908Gold flowering stage 46.928
SRP132670SRR6706286Control25.749
SRR6706287Light intensity 50%33.215
SRR6706288Light intensity 20%38.189
CNP0000432CNS0095592Slightly white alabastrum(diploid) 155.991
CNS0095593Slightly white alabastrum(diploid) 273.059
CNS0095594Slightly white alabastrum(diploid) 347.736
CNS0095595Whole white alabastrum(diploid) 253.310
CNS0095596Whole white alabastrum(diploid) 357.069
CNS0095597Whole white alabastrum(diploid) 449.059
CNS0095598Silvery flower (diploied) 131.360
CNS0095599Silvery flower (diploied) 237.352
CNS0095600Silvery flower (diploied) 367.795
CNS0095601Golden flower (diploid) 126.256
CNS0095602Golden flower (diploid) 236.879
CNS0095603Golden flower (diploid) 337.849
CNS0095604Slightly white alabastrum(tetraploid) 167.731
CNS0095605Slightly white alabastrum(tetraploid) 267.127
CNS0095606Slightly white alabastrum(tetraploid) 3115.058
CNS0095607Whole white alabastrum(tetraploid) 122.697
CNS0095608Whole white alabastrum(tetraploid) 234.403
CNS0095609Whole white alabastrum(tetraploid) 372.137
CNS0095610Silvery flower (tetraploid) 149.102
CNS0095611Silvery flower (tetraploid) 253.128
CNS0095612Silvery flower (tetraploid) 383.579
CNS0095613Golden flower (tetraploid) 135.644
CNS0095614Golden flower (tetraploid) 236.842
CNS0095615Golden flower (tetraploid) 349.699
CRA001975CRR073297Stem 113.872
CRR073298Stem 221.186
CRR073299Stem 314.558
CRR073300Leaf 131.306
CRR073301Leaf 228.825
CRR073302Leaf 334.281
CRR073303Juvenile bud 131.010
CRR073304Juvenile bud 223.842
CRR073305Juvenile bud 313.788
CRR073306Third green 125.886
CRR073307Third green 226.708
CRR073308Third green 320.677
CRR073309Second white 116.598
CRR073310Second white 215.042
CRR073311Second white 310.326
CRR073312Silver flowering 16.221
CRR073313Silver flowering 26.393
CRR073314Silver flowering 35.958
CRR073315Gold flowering 10.433
CRR073316Gold flowering 20.418
CRR073317Gold flowering 32.716
CRR073318Tawny withering 18.513
CRR073319Tawny withering 218.958
CRR073320Tawny withering 33.356