Detail information of GWHGAAZE021889


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002528834.17.68507E-66conserved hypothetical protein [Ricinus communis]
trEMBLtr|B9SS65|B9SS65_RICCO3E-66Putative uncharacterized protein {ECO:0000313|EMBL:EEF33568.1}
TAIR10AT3G23350.19E-30ENTH/VHS family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6336666563368713-
GWHAAZE00000006mRNA6336666563368713-
GWHAAZE00000006exon6336666563367211-
GWHAAZE00000006exon6336770763367913-
GWHAAZE00000006exon6336864363368713-
GWHAAZE00000006CDS6336864363368713-
GWHAAZE00000006CDS6336770763367913-
GWHAAZE00000006CDS6336666563367211-
Transcript Sequence

Network for GWHGAAZE021889

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01417.21ENTH11143.00E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12471EPN Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.154
SRR3591710White floral bud3.239
SRR3591711White flower0.132
SRR3591712Green floral bud12.804
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 3.351
SRR8316896Juvenile bud stage 9.826
SRR8316897Juvenile bud stage 6.017
SRR8316894Third green stage 3.110
SRR8316900Third green stage 12.153
SRR8316901Third green stage 11.367
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.125
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.076
SRR8316904Silver flowering stage0.006
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.296
SRR6706287Light intensity 50%0.780
SRR6706288Light intensity 20%0.552
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.013
CNS0095593Slightly white alabastrum(diploid) 24.830
CNS0095594Slightly white alabastrum(diploid) 313.121
CNS0095595Whole white alabastrum(diploid) 212.801
CNS0095596Whole white alabastrum(diploid) 315.981
CNS0095597Whole white alabastrum(diploid) 413.100
CNS0095598Silvery flower (diploied) 10.032
CNS0095599Silvery flower (diploied) 20.548
CNS0095600Silvery flower (diploied) 30.350
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.056
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 117.263
CNS0095605Slightly white alabastrum(tetraploid) 215.452
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 119.807
CNS0095608Whole white alabastrum(tetraploid) 222.823
CNS0095609Whole white alabastrum(tetraploid) 312.014
CNS0095610Silvery flower (tetraploid) 10.118
CNS0095611Silvery flower (tetraploid) 20.323
CNS0095612Silvery flower (tetraploid) 30.168
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.045
CRA001975CRR073297Stem 12.328
CRR073298Stem 21.268
CRR073299Stem 30.747
CRR073300Leaf 12.841
CRR073301Leaf 21.602
CRR073302Leaf 31.657
CRR073303Juvenile bud 11.179
CRR073304Juvenile bud 20.963
CRR073305Juvenile bud 30.000
CRR073306Third green 10.052
CRR073307Third green 20.223
CRR073308Third green 30.259
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.113
CRR073313Silver flowering 20.065
CRR073314Silver flowering 30.005
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.341
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.596
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.253