Detail information of GWHGAAZE021894


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010326762.10PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Solanum lycopersicum]
COGYP_007129278.12E-10Ankyrin
Swissprottr|Q4FE47|XB35_ARATH2E-163Putative E3 ubiquitin-protein ligase XBAT35
trEMBLtr|K4CW42|K4CW42_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g090160.2.1}
TAIR10AT3G23280.13E-95XB3 ortholog 5 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6355417863560448-
GWHAAZE00000006mRNA6355417863560448-
GWHAAZE00000006exon6355417863554845-
GWHAAZE00000006exon6355678263556856-
GWHAAZE00000006exon6355695963557061-
GWHAAZE00000006exon6355754363557624-
GWHAAZE00000006exon6355817963558270-
GWHAAZE00000006exon6355839463558482-
GWHAAZE00000006exon6355859863558678-
GWHAAZE00000006exon6355936663559480-
GWHAAZE00000006exon6356034763560448-
GWHAAZE00000006CDS6356034763560448-
GWHAAZE00000006CDS6355936663559480-
GWHAAZE00000006CDS6355859863558678-
GWHAAZE00000006CDS6355839463558482-
GWHAAZE00000006CDS6355817963558270-
GWHAAZE00000006CDS6355754363557624-
GWHAAZE00000006CDS6355695963557061-
GWHAAZE00000006CDS6355678263556856-
GWHAAZE00000006CDS6355417863554845-
Transcript Sequence

Network for GWHGAAZE021894

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13857.7Ank_5601163.80E-08
PF13920.7zf-C3HC4_34154625.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf89.219
SRR3591706second leaf44.105
SRR3591707mature leaf24.402
SRR3591708Shoot apex48.471
SRR3591709Stem96.445
SRR3591710White floral bud48.323
SRR3591711White flower44.770
SRR3591712Green floral bud47.009
SRR3591713Yellow flower30.719
SRP173429 SRR8316895Juvenile bud stage 25.406
SRR8316896Juvenile bud stage 34.569
SRR8316897Juvenile bud stage 20.585
SRR8316894Third green stage 16.029
SRR8316900Third green stage 37.808
SRR8316901Third green stage 39.230
SRR8316898Complete white stage 14.357
SRR8316899Complete white stage 72.851
SRR8316903Complete white stage 28.994
SRR8316902Silver flowering stage16.836
SRR8316904Silver flowering stage23.267
SRR8316905Silver flowering stage10.185
SRR8316906Gold flowering stage 36.920
SRR8316907Gold flowering stage 35.565
SRR8316908Gold flowering stage 33.021
SRP132670SRR6706286Control50.616
SRR6706287Light intensity 50%50.385
SRR6706288Light intensity 20%51.626
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.497
CNS0095593Slightly white alabastrum(diploid) 226.271
CNS0095594Slightly white alabastrum(diploid) 319.263
CNS0095595Whole white alabastrum(diploid) 220.987
CNS0095596Whole white alabastrum(diploid) 317.279
CNS0095597Whole white alabastrum(diploid) 419.422
CNS0095598Silvery flower (diploied) 121.412
CNS0095599Silvery flower (diploied) 222.025
CNS0095600Silvery flower (diploied) 333.168
CNS0095601Golden flower (diploid) 119.049
CNS0095602Golden flower (diploid) 233.421
CNS0095603Golden flower (diploid) 329.474
CNS0095604Slightly white alabastrum(tetraploid) 125.477
CNS0095605Slightly white alabastrum(tetraploid) 217.344
CNS0095606Slightly white alabastrum(tetraploid) 348.766
CNS0095607Whole white alabastrum(tetraploid) 116.728
CNS0095608Whole white alabastrum(tetraploid) 212.810
CNS0095609Whole white alabastrum(tetraploid) 329.210
CNS0095610Silvery flower (tetraploid) 129.277
CNS0095611Silvery flower (tetraploid) 233.508
CNS0095612Silvery flower (tetraploid) 331.271
CNS0095613Golden flower (tetraploid) 113.045
CNS0095614Golden flower (tetraploid) 221.026
CNS0095615Golden flower (tetraploid) 325.275
CRA001975CRR073297Stem 161.857
CRR073298Stem 256.951
CRR073299Stem 363.805
CRR073300Leaf 170.888
CRR073301Leaf 279.082
CRR073302Leaf 359.928
CRR073303Juvenile bud 162.315
CRR073304Juvenile bud 253.015
CRR073305Juvenile bud 384.777
CRR073306Third green 133.579
CRR073307Third green 235.680
CRR073308Third green 333.440
CRR073309Second white 134.753
CRR073310Second white 233.119
CRR073311Second white 325.081
CRR073312Silver flowering 129.894
CRR073313Silver flowering 231.721
CRR073314Silver flowering 326.338
CRR073315Gold flowering 142.596
CRR073316Gold flowering 254.181
CRR073317Gold flowering 351.574
CRR073318Tawny withering 179.866
CRR073319Tawny withering 251.405
CRR073320Tawny withering 392.634