Gene detail

Detail information of GWHGAAZE021920

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008224052.1	0	PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
COG	YP_007317914.1	2E-18	WD40 repeat-containing protein
Swissprot	tr\|P93107\|PF20_CHLRE	2E-13	Flagellar WD repeat-containing protein Pf20
trEMBL	tr\|M5XZK6\|M5XZK6_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ27353.1} (Fragment)
TAIR10	AT1G04140.2	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	63999646	64007623	+
GWHAAZE00000006	mRNA	63999646	64007623	+
GWHAAZE00000006	exon	63999646	63999821	+
GWHAAZE00000006	exon	63999964	64000080	+
GWHAAZE00000006	exon	64000196	64000280	+
GWHAAZE00000006	exon	64000729	64000837	+
GWHAAZE00000006	exon	64000951	64001018	+
GWHAAZE00000006	exon	64001336	64001437	+
GWHAAZE00000006	exon	64001518	64002419	+
GWHAAZE00000006	exon	64003739	64003942	+
GWHAAZE00000006	exon	64004068	64004128	+
GWHAAZE00000006	exon	64004968	64005081	+
GWHAAZE00000006	exon	64005955	64006026	+
GWHAAZE00000006	exon	64006602	64006715	+
GWHAAZE00000006	exon	64006796	64006879	+
GWHAAZE00000006	exon	64007564	64007623	+
GWHAAZE00000006	CDS	63999646	63999821	+
GWHAAZE00000006	CDS	63999964	64000080	+
GWHAAZE00000006	CDS	64000196	64000280	+
GWHAAZE00000006	CDS	64000729	64000837	+
GWHAAZE00000006	CDS	64000951	64001018	+
GWHAAZE00000006	CDS	64001336	64001437	+
GWHAAZE00000006	CDS	64001518	64002419	+
GWHAAZE00000006	CDS	64003739	64003942	+
GWHAAZE00000006	CDS	64004068	64004128	+
GWHAAZE00000006	CDS	64004968	64005081	+
GWHAAZE00000006	CDS	64005955	64006026	+
GWHAAZE00000006	CDS	64006602	64006715	+
GWHAAZE00000006	CDS	64006796	64006879	+
GWHAAZE00000006	CDS	64007564	64007623	+

Transcript Sequence
>GWHTAAZE021946 TGTAGTAATGTCTTTCGACTGTTAGCACGGAGAGAGGTATCTCCTCGAACAAAAGATTATTCTAGAAAGTTATGGAGAGAGGCTTCGAATGGTTATGTTGATTCCTTTGGGTTAAGATCTGAAGCAGCAACTGATGCAAGACGGAATCTTGTCTCATGGTACGTTCATTGTTCTCGGGTTGAGGCAGAGTCACTGCGACATTTATCAGCTAAGTATTGTCCACTCTTGCCTCCTCCTCGGTCGACCATTGCAGCAGCCTTTAGTCCTGATGGCAAAACGCTTGCTTCCACACATGGAGACCATACAGTAAAGATAATTGATTGCCAAACGGGGAGGTGCTTAAAGGTGTTGTGTGGTCATCGGAGGACACCTTGGGTGGTTAGGTTCCATCCACTGTGCCCAGAAATCCTTGCAAGTGGAAGTTTGGACCATGAAGTTCGCTTATGGGATGCAAATACTGCAGAGTGCATAGGATCGCGTGATTTTTACCGTCCTATTGCTTCTATTGCTTTCCATGCCGAAGGGGACCTTCTAGCTGTTGCTTCTGGCCACAAGAAGAGGGGAGACGCCCCACCAGCTATCATACTTAAAACACGGCGTTCTCTTCGGGCTGTGCATTTTCATCCGCATGCTGCCCCGTTTCTTCTAACTGCCGAGCTCAATGAACTGGAATCATCAGACTCTTCGATGACACTTGCAACTTCTCCGGGTTATTTGTGTTACCCTCCTCCTACTGTATATTTAGCAGATGCTCATTCTGGTTATAGATCTAATTTGGCACATGAACTGCCTATCACATCTCTCCCATTCTTCATGTGGCCTTCGGTTGGTAGAGGTGAGGGGAGAACGCCTTTGCAGCAAATTGATGATGCCAACTCAACTATTGCCCAAGAAAGACTAGATACTTCTGCTTCTGTGCGACTTCTCACATATTCAACTCCTTCAGGACAGTACGAACTCTTATTGTCTCCTATCGAAACTAGTAATTCTCCTGCACCAGAAGAACCACAATCTAATATGGAACATGATGCTGCTCCACCTGGAATTGATGCTATGGAGACGGAACTGCAGCCTGAAGAGAGAAACAATCAGTTTCTCCCTTTGGTTGATTCAACGCATTGGGAACTACCGTTCTTGCAAGGGTGGTTGATCGGGCAAAGCCAAGCTGGCCAACATGCACCTCGAGGTGGCGCTGCTGAAAATTTGCCCACATTAAGCGGAATAGAGAATAATGCTTCAACAGTGCCATCGGTAATGCCAGCCAATAATGATCAATCCAGAGGTAGTGGAAGATCTGGATCGCGGCACCGCTCTTCTGCTCCTCGTATGATATCTGCAACTGGATTCGGTGAAGATGCTCCACTAAATAATGAGAATGTTCCTCAAGCCCCTGTTAGTCGGATCCAATCGGAGATTGCCACATCGCTGGCTGCAGCTGCGGCTGCTGAATTACCTTGCACCGTCAAGCTTAGAATATGGCCTCATGATGTAAAGGAACCCTTTGCAACTCTGGACTCGGAAAGATGCCGCTTGACTATACCACATGCCGTCCTTTGTAGCGAGATGGGTGCCCATTTTTCCCCTTGTGGGAGATTTTTAGCTGCCTGTGTTGCATGTGTTCTGCCAAACATGGAGGCTGATCCCGGTTTTCATGGACAAATTAACCATGATGTCACTGGGGCTGCAACATCCCCAACCCGACACCCAATTTCAGCTCACCAAGTCCTTTATGAGCTTCGGATATATTCTCTTGAGGAGGCAACATTTGGTTTGGTGCTTGCGTCACGGGCGATCAGAGCTGCTCATTGTTTAACTTCAATTCAGTTCTCACCAACATCCGAACATTTGCTACTTGCCTATGGTCGTCGCCACAGTTCACTTCTTAAGAGTGTTGTGATTGATGGAGAGACAACAGTATCCATTTATACGATCCTGGAGATCAGGAACTACTTGAACCTGCTTGTTCCAGCCTTCCAGGTGGTGCTCCTAGTACCTATTAGCCCTGCTGAAGTCTACAGAGTATCTGATATGGAACTGGTGAGAGTACTTCCTAGCTCAGAGGATGAAGTCAATGTAGCGTGTTTTCATCCTTCTATTGGTGGTGGCCTTGTCTATGGAACCAAGGAAGGAAAGCTCAGGATCCTTCAATATGACACCCAAGGCTCACCTTATACAGGACCCTGTTTTCCAGATCAAAATATGCTTGAGGGGCCAAGATTGCCATGGTCTGTGAAGAGGAGAAATCTGGGGAACAAGGGTACCCAATAG

Network for GWHGAAZE021920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	84	107	0.046
PF00400.33	WD40	111	150	0.021

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.599
	SRR3591706	second leaf	11.874
	SRR3591707	mature leaf	15.392
	SRR3591708	Shoot apex	17.970
	SRR3591709	Stem	18.179
	SRR3591710	White floral bud	16.216
	SRR3591711	White flower	17.708
	SRR3591712	Green floral bud	20.540
	SRR3591713	Yellow flower	13.919
SRP173429	SRR8316895	Juvenile bud stage	11.609
	SRR8316896	Juvenile bud stage	14.431
	SRR8316897	Juvenile bud stage	6.845
	SRR8316894	Third green stage	7.359
	SRR8316900	Third green stage	18.733
	SRR8316901	Third green stage	19.041
	SRR8316898	Complete white stage	5.411
	SRR8316899	Complete white stage	19.370
	SRR8316903	Complete white stage	14.413
	SRR8316902	Silver flowering stage	6.121
	SRR8316904	Silver flowering stage	12.911
	SRR8316905	Silver flowering stage	5.065
	SRR8316906	Gold flowering stage	18.322
	SRR8316907	Gold flowering stage	16.542
	SRR8316908	Gold flowering stage	19.353
SRP132670	SRR6706286	Control	17.829
	SRR6706287	Light intensity 50%	18.810
	SRR6706288	Light intensity 20%	20.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.136
	CNS0095593	Slightly white alabastrum(diploid) 2	9.825
	CNS0095594	Slightly white alabastrum(diploid) 3	9.805
	CNS0095595	Whole white alabastrum(diploid) 2	11.308
	CNS0095596	Whole white alabastrum(diploid) 3	10.024
	CNS0095597	Whole white alabastrum(diploid) 4	8.770
	CNS0095598	Silvery flower (diploied) 1	12.232
	CNS0095599	Silvery flower (diploied) 2	11.602
	CNS0095600	Silvery flower (diploied) 3	24.514
	CNS0095601	Golden flower (diploid) 1	10.277
	CNS0095602	Golden flower (diploid) 2	23.607
	CNS0095603	Golden flower (diploid) 3	20.207
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.606
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.791
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.555
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.599
	CNS0095610	Silvery flower (tetraploid) 1	19.115
	CNS0095611	Silvery flower (tetraploid) 2	20.960
	CNS0095612	Silvery flower (tetraploid) 3	17.980
	CNS0095613	Golden flower (tetraploid) 1	9.315
	CNS0095614	Golden flower (tetraploid) 2	15.956
	CNS0095615	Golden flower (tetraploid) 3	24.401
CRA001975	CRR073297	Stem 1	20.891
	CRR073298	Stem 2	18.196
	CRR073299	Stem 3	16.199
	CRR073300	Leaf 1	25.978
	CRR073301	Leaf 2	25.242
	CRR073302	Leaf 3	17.636
	CRR073303	Juvenile bud 1	19.462
	CRR073304	Juvenile bud 2	14.924
	CRR073305	Juvenile bud 3	25.614
	CRR073306	Third green 1	14.544
	CRR073307	Third green 2	9.291
	CRR073308	Third green 3	13.862
	CRR073309	Second white 1	11.624
	CRR073310	Second white 2	14.298
	CRR073311	Second white 3	14.701
	CRR073312	Silver flowering 1	12.470
	CRR073313	Silver flowering 2	11.627
	CRR073314	Silver flowering 3	12.351
	CRR073315	Gold flowering 1	9.267
	CRR073316	Gold flowering 2	14.484
	CRR073317	Gold flowering 3	8.249
	CRR073318	Tawny withering 1	20.822
	CRR073319	Tawny withering 2	13.227
	CRR073320	Tawny withering 3	17.290