Detail information of GWHGAAZE021926


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007034521.11.07759E-18F-box family protein [Theobroma cacao]
trEMBLtr|A0A061EM39|A0A061EM39_THECC4E-19F-box family protein {ECO:0000313|EMBL:EOY05447.1}
TAIR10AT4G24210.10.003F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6414600664147549+
GWHAAZE00000006mRNA6414600664147549+
GWHAAZE00000006exon6414600664146369+
GWHAAZE00000006exon6414747364147549+
GWHAAZE00000006CDS6414600664146369+
GWHAAZE00000006CDS6414747364147549+
Transcript Sequence

Network for GWHGAAZE021926

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like62971.70E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.531
SRR3591706second leaf8.515
SRR3591707mature leaf18.209
SRR3591708Shoot apex13.176
SRR3591709Stem24.042
SRR3591710White floral bud12.768
SRR3591711White flower20.614
SRR3591712Green floral bud10.473
SRR3591713Yellow flower19.005
SRP173429 SRR8316895Juvenile bud stage 7.645
SRR8316896Juvenile bud stage 16.174
SRR8316897Juvenile bud stage 8.566
SRR8316894Third green stage 6.137
SRR8316900Third green stage 20.571
SRR8316901Third green stage 17.841
SRR8316898Complete white stage 6.227
SRR8316899Complete white stage 40.414
SRR8316903Complete white stage 6.975
SRR8316902Silver flowering stage5.514
SRR8316904Silver flowering stage6.587
SRR8316905Silver flowering stage3.278
SRR8316906Gold flowering stage 8.668
SRR8316907Gold flowering stage 8.261
SRR8316908Gold flowering stage 9.687
SRP132670SRR6706286Control25.110
SRR6706287Light intensity 50%25.353
SRR6706288Light intensity 20%27.231
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.481
CNS0095593Slightly white alabastrum(diploid) 28.962
CNS0095594Slightly white alabastrum(diploid) 316.093
CNS0095595Whole white alabastrum(diploid) 211.419
CNS0095596Whole white alabastrum(diploid) 315.385
CNS0095597Whole white alabastrum(diploid) 411.764
CNS0095598Silvery flower (diploied) 112.090
CNS0095599Silvery flower (diploied) 210.378
CNS0095600Silvery flower (diploied) 314.297
CNS0095601Golden flower (diploid) 17.135
CNS0095602Golden flower (diploid) 212.176
CNS0095603Golden flower (diploid) 311.116
CNS0095604Slightly white alabastrum(tetraploid) 120.587
CNS0095605Slightly white alabastrum(tetraploid) 218.454
CNS0095606Slightly white alabastrum(tetraploid) 320.713
CNS0095607Whole white alabastrum(tetraploid) 115.593
CNS0095608Whole white alabastrum(tetraploid) 218.816
CNS0095609Whole white alabastrum(tetraploid) 321.272
CNS0095610Silvery flower (tetraploid) 114.003
CNS0095611Silvery flower (tetraploid) 212.647
CNS0095612Silvery flower (tetraploid) 311.959
CNS0095613Golden flower (tetraploid) 16.516
CNS0095614Golden flower (tetraploid) 215.016
CNS0095615Golden flower (tetraploid) 311.908
CRA001975CRR073297Stem 113.295
CRR073298Stem 211.531
CRR073299Stem 316.759
CRR073300Leaf 121.172
CRR073301Leaf 219.525
CRR073302Leaf 318.502
CRR073303Juvenile bud 128.077
CRR073304Juvenile bud 224.885
CRR073305Juvenile bud 329.893
CRR073306Third green 111.970
CRR073307Third green 213.398
CRR073308Third green 314.752
CRR073309Second white 17.112
CRR073310Second white 29.464
CRR073311Second white 36.099
CRR073312Silver flowering 13.211
CRR073313Silver flowering 26.526
CRR073314Silver flowering 33.393
CRR073315Gold flowering 112.216
CRR073316Gold flowering 220.453
CRR073317Gold flowering 315.210
CRR073318Tawny withering 112.577
CRR073319Tawny withering 210.070
CRR073320Tawny withering 39.320