Gene detail

Detail information of GWHGAAZE021931

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006492150.1	PREDICTED: chaperonin CPN60-2, mitochondrial-like [Citrus sinensis]
COG	YP_005030251.1	large subunit of chaperonin GroESL
Swissprot	tr\|Q05046\|CH62_CUCMA	Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBL	tr\|B9RWQ2\|B9RWQ2_RICCO	Chaperonin-60kD, ch60, putative {ECO:0000313\|EMBL:EEF44304.1}
TAIR10	AT3G23990.1	heat shock protein 60

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64249626	64255093	+
GWHAAZE00000006	mRNA	64249626	64255093	+
GWHAAZE00000006	exon	64249626	64249727	+
GWHAAZE00000006	exon	64249884	64249911	+
GWHAAZE00000006	exon	64250026	64250136	+
GWHAAZE00000006	exon	64250479	64250638	+
GWHAAZE00000006	exon	64250953	64251128	+
GWHAAZE00000006	exon	64251258	64251353	+
GWHAAZE00000006	exon	64251439	64251543	+
GWHAAZE00000006	exon	64251700	64251786	+
GWHAAZE00000006	exon	64251898	64251984	+
GWHAAZE00000006	exon	64252085	64252165	+
GWHAAZE00000006	exon	64252256	64252324	+
GWHAAZE00000006	exon	64252561	64252638	+
GWHAAZE00000006	exon	64252768	64252863	+
GWHAAZE00000006	exon	64253236	64253335	+
GWHAAZE00000006	exon	64253676	64253779	+
GWHAAZE00000006	exon	64254111	64254222	+
GWHAAZE00000006	exon	64254416	64254494	+
GWHAAZE00000006	exon	64254700	64255093	+
GWHAAZE00000006	five_prime_UTR	64249626	64249689	+
GWHAAZE00000006	CDS	64249690	64249727	+
GWHAAZE00000006	CDS	64249884	64249911	+
GWHAAZE00000006	CDS	64250026	64250136	+
GWHAAZE00000006	CDS	64250479	64250638	+
GWHAAZE00000006	CDS	64250953	64251128	+
GWHAAZE00000006	CDS	64251258	64251353	+
GWHAAZE00000006	CDS	64251439	64251543	+
GWHAAZE00000006	CDS	64251700	64251786	+
GWHAAZE00000006	CDS	64251898	64251984	+
GWHAAZE00000006	CDS	64252085	64252165	+
GWHAAZE00000006	CDS	64252256	64252324	+
GWHAAZE00000006	CDS	64252561	64252638	+
GWHAAZE00000006	CDS	64252768	64252863	+
GWHAAZE00000006	CDS	64253236	64253335	+
GWHAAZE00000006	CDS	64253676	64253779	+
GWHAAZE00000006	CDS	64254111	64254222	+
GWHAAZE00000006	CDS	64254416	64254494	+
GWHAAZE00000006	CDS	64254700	64254811	+
GWHAAZE00000006	three_prime_UTR	64254812	64255093	+

Transcript Sequence
>GWHTAAZE021957 AAACTGGCAGCCTACTGATTTGATTAAGAGAAGGGAAATATATATACGTATACATTATTGAGTCATGTACCATTTCGCTGCAAACCTTGATTCCGAAACTCGGGTTTCTGGAAGCAGCAGCAGCAGACAGATTACTAGTAGGTTGGCCAAAGCCATCAAATTGGGAGATGGAGCACGGGGTTCAATGCTCGAGGGTGTTAAGAAGCTTGCTGATGCGGTTAAGGTGACTATGGGCCCCAAGGGGCGTAATGTGGTGATAGAACAAACTTCTGGGGCCCCGAAAGTGACAAAAGATGGGGTGACTGTGGCAAATAGCATTGAATTTAGGAACAATGCCAAGAATATTGGTGCAAGCTTGGTAAAACAGGTTGCAAATGCTACAAACGATGTAGCTGGCGATGGGGCTACTTGCGCAATGGTCCTCGCCCATGCTATATTTACCGAAGGATATATGTCAGTTCAAACTGGCATGAATGCAATGGACCTTCAACTTGGTGTAAGTAAGGCTGTTCATGCTGTGATAGCAAACTTGAAGCACAGGGCACTGGATGTAAGCACACCGGAGGAAATATTACAGTTTGGGACGATATTTGCAAATGGAGAAAGTGAAATTGGTCAGCTGATTGCGGATGCTCTGGAGAAAGTTGGAAAGGGTGGAATTATTACAATTCATGATAGTGAGACATTCTATAATGGATTGGAAGTTGTCAAGGGAATGAAGGTCGGCAGAGGCTACATTTCCCCATATTTTATCACAGACCAGAAGAACCAGAAATGTCAATTAGAAAGTCCTTACATTCTTATCAATGATGGGAAAATCTCAAGGGCGGATGCTCTGGTGGAAGTCTTAAGGTTGGTATTGCCGACAGAAAAGCCTCTGTTGATCATCGCTGAAGATGTAGAAAGTCGTGCACTTGCGGTGCTTCTTACTACGCCTTCAAATGGAATGAAGGTTTGTGCTATAAAACCTCCAGGATTTGGGGAAAACAGTAGGGCCATCATGCAGGACCTTGCCATTCTCACAGGAAGCACTGTTATTTCTCCAGAATTGAGTATTTCTCTTGACAAGGTGGAGATAGGGATGCTTGGCACATGTAGCTACGTCACGATATCTAAGGATGACACAGTTATTGTTGATGGTGGTGGTACGGAAGCTAACATAGCAGGAAGAATTCAACAGATTCGTCAGAAAATCGAACAAAGTACTTCTGATTACGAAAGGACGAAGTTGCAAGAGAGAGTAGCAAAGCTAGCTGGCGGTGTTGCTGTACTGAAGATTGCAGGGGACAGTGATACAGAAGTTGCTGAGAAGAAAGACAGAGTTGCAGATGCCGTAAATGCCACAATGGCAGCGGTAGAGGAAGGAATTGTACCCGGTGGTGGTGCTGCTCTTTTGTATGCATCAAAAGAGTTGGAAAAACTGCAAACAGACAACTCCGGTCAGAAGGCTGGTGTTCAGATTATTCAAAATGCACTAAAGACATCAGTGCGCACAATTGCCTCAAATGCCGGAGTAGATGGTGACGTTGTCATTGGCAAGCTGTTGGAGCAGGAGCAGGATAAGCCTCATCAAGTGTATGATGCTGCTACAAGTGAATACGTAGATATGATCAAAAGCGGAATCATCGATCCGGTGAAAGTGATAAGAACAGCCTTGGTTGAAGCAGCAAGTGTATCTTCTTTGATGATGACTACGGAAGCTATTGTGGTTGAGCTTCCAGAGGATGAGATGGAAGCTCTGGAGTACCCTCTTGAAGTTGTGGCCGGCGGCAAGGGTTATTGATCCAAATTGCTTTGACATATATATGTCATTTCGGTTAGGGTTTTTTGGCTCATTACAAGGAATTGATAATGAGAACCAAAGTATCCATGCTATTTTAATGGGGAGAGTATTAGTTTGAAGTATTGTGTAATGTTTAGGGTGGAAATAATCTCTGATTATTGTTTCCAAGAATGGATTGATACCTCCTCTTTACTATTCAAAACAAATTTTATATTTTACTTGAATAATTTAAATTAATGTGAACATTTGTAAATAAATTAAATTTAAAAATAGTTGATTGAA

Network for GWHGAAZE021931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	48	550	8.40E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0042026	biological_process	protein refolding
GO:0006457	biological_process	protein folding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.858
	SRR3591706	second leaf	2.077
	SRR3591707	mature leaf	1.598
	SRR3591708	Shoot apex	1.262
	SRR3591709	Stem	34.307
	SRR3591710	White floral bud	1.766
	SRR3591711	White flower	1.228
	SRR3591712	Green floral bud	1.238
	SRR3591713	Yellow flower	0.050
SRP173429	SRR8316895	Juvenile bud stage	13.073
	SRR8316896	Juvenile bud stage	10.425
	SRR8316897	Juvenile bud stage	2.930
	SRR8316894	Third green stage	1.991
	SRR8316900	Third green stage	3.579
	SRR8316901	Third green stage	4.443
	SRR8316898	Complete white stage	0.120
	SRR8316899	Complete white stage	0.882
	SRR8316903	Complete white stage	0.970
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.178
	SRR8316905	Silver flowering stage	0.115
	SRR8316906	Gold flowering stage	0.129
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.048
SRP132670	SRR6706286	Control	4.200
	SRR6706287	Light intensity 50%	4.130
	SRR6706288	Light intensity 20%	3.981
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.566
	CNS0095593	Slightly white alabastrum(diploid) 2	0.093
	CNS0095594	Slightly white alabastrum(diploid) 3	1.883
	CNS0095595	Whole white alabastrum(diploid) 2	0.340
	CNS0095596	Whole white alabastrum(diploid) 3	0.350
	CNS0095597	Whole white alabastrum(diploid) 4	0.102
	CNS0095598	Silvery flower (diploied) 1	0.280
	CNS0095599	Silvery flower (diploied) 2	0.367
	CNS0095600	Silvery flower (diploied) 3	0.127
	CNS0095601	Golden flower (diploid) 1	0.237
	CNS0095602	Golden flower (diploid) 2	0.203
	CNS0095603	Golden flower (diploid) 3	0.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.029
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.432
	CNS0095610	Silvery flower (tetraploid) 1	0.122
	CNS0095611	Silvery flower (tetraploid) 2	0.065
	CNS0095612	Silvery flower (tetraploid) 3	0.022
	CNS0095613	Golden flower (tetraploid) 1	0.017
	CNS0095614	Golden flower (tetraploid) 2	0.067
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	13.806
	CRR073298	Stem 2	6.280
	CRR073299	Stem 3	0.946
	CRR073300	Leaf 1	1.504
	CRR073301	Leaf 2	0.692
	CRR073302	Leaf 3	0.542
	CRR073303	Juvenile bud 1	0.063
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.143
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.362
	CRR073319	Tawny withering 2	1.644
	CRR073320	Tawny withering 3	2.111