Gene detail

Detail information of GWHGAAZE021939

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283031.3	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Vitis vinifera]
COG	YP_004775215.1	9E-56	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LVP0\|Y5639_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g63930 (Precursor)
trEMBL	tr\|F6HS49\|F6HS49_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57508.1}
TAIR10	AT5G63930.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64341283	64344345	+
GWHAAZE00000006	mRNA	64341283	64344345	+
GWHAAZE00000006	exon	64341283	64344211	+
GWHAAZE00000006	exon	64344320	64344345	+
GWHAAZE00000006	CDS	64341283	64344211	+
GWHAAZE00000006	CDS	64344320	64344345	+

Transcript Sequence
>GWHTAAZE021965 ATGGAGCTTAGAAGAGGTTTGATTTTGGGTTTGATGAGGATTTTCACTGCTGTTCTACTCATTTGTCCTTCAGAGGGGTTGAACTCGGATGGAAAATCCCTTCTTGAATTGAAGAAAAGTATTAAAGATGAATCCAACAATCTTTGGAATTGGAATTCTAGCGACCAAACACCATGTGGGTGGAAAGGTGTGACTTGCACATGGGGCCGTAATCCAATGGTGTGGTCTCTCGATTTGAATTCGATGAATCTTTCGGGTACATTTAACTCCAGTATAGGTAATTTGCGCTTCTTAACTTCTCTTGACATTTCTTACAATGGGTTTACTGGAAATATCCCAAAGGAGATTGGGAATTGCTTGAAATTGGAAAATCTTTATGTGAACAGCAATCAATTTGATGGGCAAATTCCAGCTGAACTCGGCAAACTTTCTTCTTTGAAAGTCTTGAATTTGTGCAATAACAAGATATCGGGTCCGATCCCAGAAGAGTTTGGGAACCTTTCTTCACTGGGGGAATTTGTGGCCTACACGAACAATCTAGTGGGCCCACTGCCTCGTTCTTTTGGCAAGCTCAAGAACTTGGTAACATTTCGAGCGGGGCAAAATGCGATTAGTGGAAGCTTACCGGCGGAGATAGGAGGTTGTCAAAGTATAGAGTATTTTGGTCTTGCCCAAAATGCTTTAAGTGGGGATATACCAAAAGAGCTTGGCTTGCTTGGGAGCTTAACAGATTTAATTCTCTGGGATAATCAGTTATCGGGTTTTGTACCGAAGGAGCTTGGAAATTGCACGAATCTTGGGACTCTTGCTTTGTACCAAAACAATCTTGTTGGAGAAATTCCAGTGGAGATTATGAGCCTTAAGTTCTTGAAGAGGCTTTACTTGTACCGGAATTTTTTGAACGGAACTATTCCAAGGGTGGTTGGGAATCTTTCGATGGCAACAGAAATTGATTTCTCTGAAAACTATTTGAATGGCGAAATCCCAACAGAGTTCAGTCAAATAAAAGGCCTAGAGTTGCTCTATCTTTTCCAAAACCAGCTCACCGGTTTTATACCGAATGAGCTTAGTAGCTTGAAGAACTTGACGAAGCTCGACCTCTCCATTAACAATCTCTCTGGCCCTATTCCTTTTGGATTCCAATATCTTGACCAAATGCTCCAATTACAGCTCTTTGATAACTCTTTAACCGGTAGCATTCCTCAAGGGCTTGGGCTTTACAGCCAACTTTGGGTGGTTGATCTTTCCGACAACTTCTTAACAGGAAGAATTCCTCCTCACATTTGCCACCATTCTAACTTGATTTTGCTGAATCTTGAATCTAATAAACTTTATGGAAATATCCCATATGGGGTCACAAATTGCAATTCATTGGTGCAGCTTCGCCTTAACGGGAATAGGCTAACGGGTAGTTTTCCGTCCGAGTTATGCAAATTGGTGAACTTCTCAGCCGTTGAACTCGGTCAGAACAAATTCAGTGGCCCGATACCACCGGAGATTGGAAACTGCCGAAAGCTGCAAAGGCTAGATCTCTCGGGCAATTTCTTCACATCTTTGCCTAAGGAGATAGGTACATTGTCTCAATTGGTCACTTTCAATATTTCGTTTAATTTGATAGCTGGGAGAATACCACCCGAAATTCTTAACTGCAAGTCGCTTCAGCGGCTTGATCTTAGCTGGAATGGGTTTATGGATACCATACCGAATGAGCTTGGTACTCTCTCTCAGCTCGAGCTTCTTATGCTTTCGGAAAATAAGTTATCTGGAAATATACCAGCGGCATTGGGTAATCTCTCTCATTTGACTGAGTTGCAAATGGGCGGTAACTTGTTTTCTGGCGAAATACCGACAGAGTTGGGTGCACTTACCAGCTTGCAAATCGCGATGAATCTTAGTAACAATAATCTCACCGGCAGTATCCCACCTTCAATTGGGAATCTTATATTACTAGAGTATTTGTTGCTCAATAACAATCATTTGAGTGGCGAAATCCCAAGCACATTTGGGAATCTGTCAAGTTTGTTGGGTTGCAACTTCTCCTATAACGACCTCACCGGTCCATTGCCGTCAATACCGTTATTTCAGAACATGGCTGTTAGCAGCTTCACGGGTAACAACGGGCTCTGCGGCAGGCCCCTTGGCGATTGCAATGAATCTCCATCGTTCGATTCAATCCCACCATTGAAAACTGTGGGCGCTCCTCGTGGGAAGATCATTGTAGTTGTTGCTGGGGTTGTTGGTGGAGTTTCTCTTGTACTTATTATTATCATAATATACTTCATGAAGAAACGCCCCGTTAAGACCCCTGCTTCTTTGCATGACGATAAAGAAGTATTGTCTTCGTCTCTCTCGGATATATATTTCCCTCCGAAAGAAGGGTTCACTTTCCAAGATCTTCTAGAAGCAACTAACAACTTCCACGATGGTTATGTTGTGGGGAGGGGAGCGGTTGGCACGGTCTACAAGGCAGTTATGCAGTCAGGACCTACAATAGCCGTCAAGAAGCTTGCTTCTAACAGAGAGGGGAACAGCATTGAGGACAGTTTTCGGGCCGAGATTTTGACTTTGGGTAATATTCGGCATCGGAATATAGTGAAACTTTACGGATTTTGCTATCACCGAGGCTCGAATTTGCTTCTTTATGAGTACTTGGGGAGAGGGAGCTTGGGGGATTTGCTTCATGGGTCATCTTGTTGCTTGGAGTGGTCAAAGCGGTTCAAGATTGCCCTTGGGGCTGCTCAAGGGGTTTCATATTTGCATCATGATTGTAAGCCAAGGATCATTCATAGGGATATCAAGTCGAACAATATTTTGCTTGATGATAACTTTGAAGCTCATGTGGGTGATTTTGGTTTGGCTAAGGTGATTGATATGCCTCAGTCGAAGTCCATGTCTGCAGTTGCTGGATCTTATGGATACATAGCTCCTGGACTTTATATACTAAAGATCATTTGA

Network for GWHGAAZE021939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	66	1.20E-10
PF00560.34	LRR_1	145	167	0.65
PF13855.7	LRR_8	504	562	1.20E-06
PF00069.26	Pkinase	807	976	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.675
	SRR3591706	second leaf	4.825
	SRR3591707	mature leaf	1.835
	SRR3591708	Shoot apex	8.711
	SRR3591709	Stem	14.939
	SRR3591710	White floral bud	18.946
	SRR3591711	White flower	26.396
	SRR3591712	Green floral bud	15.002
	SRR3591713	Yellow flower	25.571
SRP173429	SRR8316895	Juvenile bud stage	5.550
	SRR8316896	Juvenile bud stage	6.598
	SRR8316897	Juvenile bud stage	3.991
	SRR8316894	Third green stage	4.420
	SRR8316900	Third green stage	14.075
	SRR8316901	Third green stage	13.159
	SRR8316898	Complete white stage	6.692
	SRR8316899	Complete white stage	25.248
	SRR8316903	Complete white stage	14.535
	SRR8316902	Silver flowering stage	11.709
	SRR8316904	Silver flowering stage	17.376
	SRR8316905	Silver flowering stage	8.142
	SRR8316906	Gold flowering stage	25.708
	SRR8316907	Gold flowering stage	24.280
	SRR8316908	Gold flowering stage	25.871
SRP132670	SRR6706286	Control	13.155
	SRR6706287	Light intensity 50%	14.277
	SRR6706288	Light intensity 20%	13.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.396
	CNS0095593	Slightly white alabastrum(diploid) 2	5.340
	CNS0095594	Slightly white alabastrum(diploid) 3	2.870
	CNS0095595	Whole white alabastrum(diploid) 2	4.296
	CNS0095596	Whole white alabastrum(diploid) 3	3.939
	CNS0095597	Whole white alabastrum(diploid) 4	3.476
	CNS0095598	Silvery flower (diploied) 1	7.101
	CNS0095599	Silvery flower (diploied) 2	7.068
	CNS0095600	Silvery flower (diploied) 3	29.448
	CNS0095601	Golden flower (diploid) 1	10.697
	CNS0095602	Golden flower (diploid) 2	28.556
	CNS0095603	Golden flower (diploid) 3	30.327
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.726
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.050
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.072
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.455
	CNS0095610	Silvery flower (tetraploid) 1	27.296
	CNS0095611	Silvery flower (tetraploid) 2	22.533
	CNS0095612	Silvery flower (tetraploid) 3	17.155
	CNS0095613	Golden flower (tetraploid) 1	11.777
	CNS0095614	Golden flower (tetraploid) 2	20.816
	CNS0095615	Golden flower (tetraploid) 3	32.986
CRA001975	CRR073297	Stem 1	8.694
	CRR073298	Stem 2	8.796
	CRR073299	Stem 3	7.321
	CRR073300	Leaf 1	17.556
	CRR073301	Leaf 2	13.666
	CRR073302	Leaf 3	13.521
	CRR073303	Juvenile bud 1	14.837
	CRR073304	Juvenile bud 2	11.718
	CRR073305	Juvenile bud 3	22.918
	CRR073306	Third green 1	10.177
	CRR073307	Third green 2	9.776
	CRR073308	Third green 3	12.729
	CRR073309	Second white 1	12.492
	CRR073310	Second white 2	9.160
	CRR073311	Second white 3	12.161
	CRR073312	Silver flowering 1	16.752
	CRR073313	Silver flowering 2	15.148
	CRR073314	Silver flowering 3	15.715
	CRR073315	Gold flowering 1	1.273
	CRR073316	Gold flowering 2	1.041
	CRR073317	Gold flowering 3	1.591
	CRR073318	Tawny withering 1	3.041
	CRR073319	Tawny withering 2	3.015
	CRR073320	Tawny withering 3	3.099