Detail information of GWHGAAZE021958


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007034887.10Stabilizer of iron transporter SufD / Polynucleotidyl transferase isoform 1 [Theobroma cacao]
Swissprottr|Q9XGW1|AGO10_ARATH0Protein argonaute 10
trEMBLtr|A0A061EU51|A0A061EU51_THECC0Protein argonaute {ECO:0000256|RuleBase:RU361178}
TAIR10AT5G43810.20Stabilizer of iron transporter SufD / Polynucleotidyl transferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6466228964670526-
GWHAAZE00000006mRNA6466228964670526-
GWHAAZE00000006exon6466228964662473-
GWHAAZE00000006exon6466283064662956-
GWHAAZE00000006exon6466317364663246-
GWHAAZE00000006exon6466336464663499-
GWHAAZE00000006exon6466361564663678-
GWHAAZE00000006exon6466377564663837-
GWHAAZE00000006exon6466415164664293-
GWHAAZE00000006exon6466439864664535-
GWHAAZE00000006exon6466511164665232-
GWHAAZE00000006exon6466532364665482-
GWHAAZE00000006exon6466558664665708-
GWHAAZE00000006exon6466599064666061-
GWHAAZE00000006exon6466616764666274-
GWHAAZE00000006exon6466660564666721-
GWHAAZE00000006exon6466737864667486-
GWHAAZE00000006exon6466766164667767-
GWHAAZE00000006exon6466785864667967-
GWHAAZE00000006exon6466842864668522-
GWHAAZE00000006exon6466863764668786-
GWHAAZE00000006exon6466960764669815-
GWHAAZE00000006exon6467008064670526-
GWHAAZE00000006CDS6467008064670526-
GWHAAZE00000006CDS6466960764669815-
GWHAAZE00000006CDS6466863764668786-
GWHAAZE00000006CDS6466842864668522-
GWHAAZE00000006CDS6466785864667967-
GWHAAZE00000006CDS6466766164667767-
GWHAAZE00000006CDS6466737864667486-
GWHAAZE00000006CDS6466660564666721-
GWHAAZE00000006CDS6466616764666274-
GWHAAZE00000006CDS6466599064666061-
GWHAAZE00000006CDS6466558664665708-
GWHAAZE00000006CDS6466532364665482-
GWHAAZE00000006CDS6466511164665232-
GWHAAZE00000006CDS6466439864664535-
GWHAAZE00000006CDS6466415164664293-
GWHAAZE00000006CDS6466377564663837-
GWHAAZE00000006CDS6466361564663678-
GWHAAZE00000006CDS6466336464663499-
GWHAAZE00000006CDS6466317364663246-
GWHAAZE00000006CDS6466283064662956-
GWHAAZE00000006CDS6466228964662473-
Transcript Sequence

Network for GWHGAAZE021958

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16486.6ArgoN1282621.60E-30
PF08699.11ArgoL12723026.60E-07
PF02170.23PAZ3274301.40E-18
PF16488.6ArgoL24414873.70E-16
PF16487.6ArgoMid4985751.50E-14
PF02171.18Piwi5909092.20E-116
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.185
SRR3591706second leaf13.860
SRR3591707mature leaf6.533
SRR3591708Shoot apex86.532
SRR3591709Stem34.560
SRR3591710White floral bud15.661
SRR3591711White flower9.537
SRR3591712Green floral bud5.521
SRR3591713Yellow flower1.503
SRP173429 SRR8316895Juvenile bud stage 11.075
SRR8316896Juvenile bud stage 7.903
SRR8316897Juvenile bud stage 3.153
SRR8316894Third green stage 3.800
SRR8316900Third green stage 1.969
SRR8316901Third green stage 2.280
SRR8316898Complete white stage 0.078
SRR8316899Complete white stage 8.980
SRR8316903Complete white stage 3.916
SRR8316902Silver flowering stage0.285
SRR8316904Silver flowering stage0.342
SRR8316905Silver flowering stage0.067
SRR8316906Gold flowering stage 0.147
SRR8316907Gold flowering stage 0.531
SRR8316908Gold flowering stage 0.439
SRP132670SRR6706286Control2.494
SRR6706287Light intensity 50%2.906
SRR6706288Light intensity 20%2.457
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.804
CNS0095593Slightly white alabastrum(diploid) 24.964
CNS0095594Slightly white alabastrum(diploid) 35.978
CNS0095595Whole white alabastrum(diploid) 24.744
CNS0095596Whole white alabastrum(diploid) 32.027
CNS0095597Whole white alabastrum(diploid) 45.915
CNS0095598Silvery flower (diploied) 115.591
CNS0095599Silvery flower (diploied) 211.165
CNS0095600Silvery flower (diploied) 33.758
CNS0095601Golden flower (diploid) 111.737
CNS0095602Golden flower (diploid) 28.217
CNS0095603Golden flower (diploid) 38.066
CNS0095604Slightly white alabastrum(tetraploid) 110.863
CNS0095605Slightly white alabastrum(tetraploid) 28.119
CNS0095606Slightly white alabastrum(tetraploid) 327.159
CNS0095607Whole white alabastrum(tetraploid) 110.443
CNS0095608Whole white alabastrum(tetraploid) 23.967
CNS0095609Whole white alabastrum(tetraploid) 33.142
CNS0095610Silvery flower (tetraploid) 10.769
CNS0095611Silvery flower (tetraploid) 28.886
CNS0095612Silvery flower (tetraploid) 35.147
CNS0095613Golden flower (tetraploid) 10.209
CNS0095614Golden flower (tetraploid) 21.022
CNS0095615Golden flower (tetraploid) 30.663
CRA001975CRR073297Stem 116.691
CRR073298Stem 211.748
CRR073299Stem 319.993
CRR073300Leaf 14.435
CRR073301Leaf 23.065
CRR073302Leaf 32.439
CRR073303Juvenile bud 11.729
CRR073304Juvenile bud 21.282
CRR073305Juvenile bud 32.478
CRR073306Third green 10.112
CRR073307Third green 20.194
CRR073308Third green 30.679
CRR073309Second white 10.179
CRR073310Second white 20.287
CRR073311Second white 30.165
CRR073312Silver flowering 10.311
CRR073313Silver flowering 20.019
CRR073314Silver flowering 30.117
CRR073315Gold flowering 12.775
CRR073316Gold flowering 24.570
CRR073317Gold flowering 35.310
CRR073318Tawny withering 116.924
CRR073319Tawny withering 217.142
CRR073320Tawny withering 320.162