Gene detail

Detail information of GWHGAAZE021963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009801473.1	1.2191E-110	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Nicotiana sylvestris]
COG	YP_002727234.1	2E-15	ankyrin repeat domain protein
Swissprot	tr\|Q9C7A2\|Y3236_ARATH	6E-32	Ankyrin repeat-containing protein At3g12360
trEMBL	tr\|F6HN60\|F6HN60_VITVI	3E-107	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56115.1}
TAIR10	AT4G03500.1	9E-52	Ankyrin repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64811963	64814180	+
GWHAAZE00000006	mRNA	64811963	64814180	+
GWHAAZE00000006	exon	64811963	64812259	+
GWHAAZE00000006	exon	64812358	64812547	+
GWHAAZE00000006	exon	64812654	64813174	+
GWHAAZE00000006	exon	64813563	64814180	+
GWHAAZE00000006	CDS	64811963	64812259	+
GWHAAZE00000006	CDS	64812358	64812547	+
GWHAAZE00000006	CDS	64812654	64813174	+
GWHAAZE00000006	CDS	64813563	64814180	+

Transcript Sequence
>GWHTAAZE021989 ATGGATCCTAAACTTTACAGGGCTGTAATGCAAGGCCAAGTCAATGTTCTTCTGCAAAACAAGGACCAACTTGGAGTCCAACTGACCCCAAACAAGAACAATATCCTCCATCTTGCAGCCTTGTTTGGTCATGCCCAGTGCGTATATGAAATTTTCAGAAATTGTTCATGGCTTTTACTTCAAGTGAATTCCAATTGCGAGACTCCCTTGCACATTGCAGCAAGAGAAAGACACCACGGGGTAGTGTACGCGCTAATTCAATGTGCAAGTACACTTGACCGCGATCTCGAACGCGGGATTTTAACGGGAGAAGATCCAGATTTCCCGTACCCATGCAATAAAGCGGATGAGACTCCGCTTTACTTGGCGGCCGAGAAAAAACTTGATAAATGCGTGTATGAAATCTTGAAAACTTGTACATCACCGTCTACCGGTGGTCCTTGCGGTAGAACAGCTTTACATGCAGCAGTCATTTTCGATTCTCAGGGGTGCACCACACAATTGTTGAAATGGAACAAAAGTCTAGCCAAGGGCGCAGACAAATACGGATGGACGCCACTCCACTGTGCCGCGTACCTTGGTCATGTAAAAAGCGCCAAACAATTACTCGATTCTGATTCATCCCTTGCTTACCTAACTGCAGAAAATTACCATAACAGTACACCTCTTCACTTAGCTGCAAGTCAAGGCGATATAAAAGTGATGGAGGAACTTATGTCTCGCTGTCCAGATTGCTGTGAGATGGTCAATGGTATGAATCAAAATATTCTACACATTGCAGCTGTGTGTGAGAAAGATAAGGTTATCAAATTTATCCTAAAGCATCCATTTTTGGATAGCTTTATCAATAGAAAAGACCGAAAGGGTAACACACCTCTCCATTTAGCTGCTCAAACTAATTGCTACGTGTCGAAACTAATAGCTCACCCGAGAAGGGACAAGATGGCATTTGACAATGAGGGCATGACTCCCCGAGACACATCCGAGCAAGGTTTTAAAAAGCTTCAGCTCCTCAAAGATTTCAAGATATTTGGTTCCCCTGGTAGGCGGAATTTAGTGAACATGGGTAAAGATGACAAGGAAATTACAAGAAAGAGGCAAAGGAATCTCGAAGAATTAAAGAAGCTAGCCGGTATAAACTTAATAGTGGCGGCACTCATAGCAACGGTAACTTTTGCCGCTGGTTTTACATTGCCAGGTGGATACAACGATAACCCAGGGCCCAGCAAAGGGAGTGCAGTACTTACAAGAACAGCGGCTTTTAGAGTGTTTGTGGTAACAGACACCTTAGCTGTGACTTGTTCTACTTGTGCTGTGTTCATTTACTTCATAACGGGGGATGTTATGGATTGGTACAAGCTTTACAAGCACATGATCTTTGCCAACTCTCTAGTCATAACCGCAGCCGGAGCAATGATGCTAGCATTCATTACTGGCTTGTATGCCGTGTTGGGGCACTCGCCTAGCCTTGCGACATTTGTCCTGGTTATTGGTTGCTTCTCATTCTTCATCTATTGCCTTGAAATGAAATTTGTATTCAGTATATACAGCAGGCTGCCTTTGCCATCGTATGTGGTCATGGGGTATGAGAAGCTGCTGGAATTTTTATTCAGGATATACCACTAG

Network for GWHGAAZE021963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0065

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	5	88	9.90E-08
PF12796.8	Ank_2	120	206	1.20E-10
PF13962.7	PGG	371	483	3.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.080
	SRR3591706	second leaf	0.429
	SRR3591707	mature leaf	0.843
	SRR3591708	Shoot apex	0.175
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.045
	SRR3591711	White flower	0.176
	SRR3591712	Green floral bud	0.063
	SRR3591713	Yellow flower	0.235
SRP173429	SRR8316895	Juvenile bud stage	0.330
	SRR8316896	Juvenile bud stage	0.470
	SRR8316897	Juvenile bud stage	0.089
	SRR8316894	Third green stage	0.128
	SRR8316900	Third green stage	0.019
	SRR8316901	Third green stage	0.082
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.838
	SRR8316903	Complete white stage	0.131
	SRR8316902	Silver flowering stage	0.055
	SRR8316904	Silver flowering stage	0.137
	SRR8316905	Silver flowering stage	0.032
	SRR8316906	Gold flowering stage	0.583
	SRR8316907	Gold flowering stage	0.151
	SRR8316908	Gold flowering stage	1.113
SRP132670	SRR6706286	Control	0.537
	SRR6706287	Light intensity 50%	0.428
	SRR6706288	Light intensity 20%	0.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.237
	CNS0095593	Slightly white alabastrum(diploid) 2	0.187
	CNS0095594	Slightly white alabastrum(diploid) 3	0.231
	CNS0095595	Whole white alabastrum(diploid) 2	0.095
	CNS0095596	Whole white alabastrum(diploid) 3	0.039
	CNS0095597	Whole white alabastrum(diploid) 4	0.065
	CNS0095598	Silvery flower (diploied) 1	0.251
	CNS0095599	Silvery flower (diploied) 2	0.283
	CNS0095600	Silvery flower (diploied) 3	0.129
	CNS0095601	Golden flower (diploid) 1	0.585
	CNS0095602	Golden flower (diploid) 2	0.206
	CNS0095603	Golden flower (diploid) 3	0.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.054
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.463
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	0.086
	CNS0095611	Silvery flower (tetraploid) 2	0.001
	CNS0095612	Silvery flower (tetraploid) 3	0.053
	CNS0095613	Golden flower (tetraploid) 1	0.036
	CNS0095614	Golden flower (tetraploid) 2	0.111
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.001
	CRR073298	Stem 2	0.056
	CRR073299	Stem 3	0.027
	CRR073300	Leaf 1	0.002
	CRR073301	Leaf 2	0.134
	CRR073302	Leaf 3	0.001
	CRR073303	Juvenile bud 1	0.001
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.152
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.161
	CRR073313	Silver flowering 2	0.073
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	0.097
	CRR073316	Gold flowering 2	0.179
	CRR073317	Gold flowering 3	0.087
	CRR073318	Tawny withering 1	0.752
	CRR073319	Tawny withering 2	2.183
	CRR073320	Tawny withering 3	0.032