Gene detail

Detail information of GWHGAAZE021984

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601634.1	0	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Nicotiana tomentosiformis]
COG	YP_003548195.1	2E-16	chalcone and stilbene synthase domain-containing protein
Swissprot	tr\|Q5XEP9\|KCS17_ARATH	0	3-ketoacyl-CoA synthase 17
trEMBL	tr\|K4CVT1\|K4CVT1_SOLLC	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G04220.1	0	3-ketoacyl-CoA synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65185280	65187746	-
GWHAAZE00000006	mRNA	65185280	65187746	-
GWHAAZE00000006	exon	65185280	65186062	-
GWHAAZE00000006	exon	65186973	65187746	-
GWHAAZE00000006	CDS	65186973	65187746	-
GWHAAZE00000006	CDS	65185280	65186062	-

Transcript Sequence
>GWHTAAZE022010 ATGGAGAACACGAACAACCTGAATCCGGAACTAGGTTCGGCCTCAATCAAACCACCCCAAAAATATACTTTCCCCAATTTCCTGTTATCCATCCGCCTCAAATACATAAAACTCGGCTACCATTACTTAATCAAACATGCAATGTACCTATTAATATTGCCTCTATTAGGCGTAGTCTCAGTCAATCTATCTATCCTTAGTGCAGAAGATTTGGCCCAATTATGGAACCACCCAAGTTTCAATTTAGTCACAGTGATCCTGTTTTCAGCTCTTGTTGTCTTCATGACCACCCTTTTCTTTAAGTGCCGCCCCAAGAAAGTCTATTTGGTAGATTTCGCGTGTTTTAAGCCCCAACCAGAACTGATGTGCCCTAGGGAAGTTTTTATGGAGAACTCTACCATGGCAGGGATCTTTAATGAAGAGAATTTGGCCTTTCAGAAGAAAATTCTTGAGAGGTCGGGTTTGGGGCAGAGGACTTATTTCCCCGACGCGCTTTTACAGATCCCACGTAACCCCTGTATGGCTGAGGCTAGGAAAGAGGCTGAAATGGTGATGTTTGGTGCCATTGATGAGCTTTTGGAGAAGACCGGGGTTAAGGCAAAGGATATTGGGATACTTGTGGTGAATTGCAGCTTGTCTAATCCGACCCCGTCTCTTTCTGCTATGGTGGTAAATCATTACAAGCTTAGGGGGAATATTTTGAGCTATAATCTTGGCGGGATGGGTTGTAGTGCTGGATTAATTTCGATTGACCTTGCCAAACAAATTTTACAGGTGCAACCCAACTCTTACGCTTTGGTTGTGAGTACCGAAAATATAACCATGAACTGGTACTTTGGTAATAATCGGTCAATGCTTGTCTCAAATTGTATATTTCGGATGGGTGGCACTGCAATCCTCCTTTCCAACAGATCATCTGATTGTCATCGATCAAAATATCAACTAATCCACACTGTACGTACCCACAAAGGCGCTGATGATAAATGTTATAGTTGCGTGTTCCAAAAAGAAGATGAAAACAAAAAAGTTGGCGTGGAACTCACAAAAGACCTAATGGCTGTAGCTGGCGAGGCCTTAAAGACAAATATCACAACTCTCGGGCCCTTAGTCCTTCCCATGTCTGAGCAACTCCTGTTTTTTGCATCCTTAGTCGCGAGAAAAGTCTTCAAAATGAAGATCAAGCCATATAATCCTGATTTTAAGCTTGCGTTTAAGCATTTTTGTATTCATGCCGGAGGAAGAGCAGTGCTAGATGAGTTAGAGAAGAACCTTGAACTCACTAAATGGCATATGGAACCTTCACGAATGACTCTTTATCGATTTGGAAATACGTCTAGTAGTTCACTGTGGTATGAATTGGCTTATTTGGAGGCTAAGGGGAGGATCAAAAAAGGTGATCGGATGTGGCAAATTGCTTTTGGGTCCGGTTTCAAGTGTAACAGTGCCATATGGTGTGCGTTAAGGACCATCGATCCAGCCAAAGAAAAGAACCCTTGGACGGACGAGATTGATGAATTTCCGGTTCACATGTCGAAAATTTCGCCACTTCTTTCTTGA

Network for GWHGAAZE021984

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	101	388	6.80E-140
PF08541.11	ACP_syn_III_C	405	484	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.793
	SRR3591706	second leaf	0.815
	SRR3591707	mature leaf	0.008
	SRR3591708	Shoot apex	11.832
	SRR3591709	Stem	4.520
	SRR3591710	White floral bud	11.570
	SRR3591711	White flower	10.212
	SRR3591712	Green floral bud	6.820
	SRR3591713	Yellow flower	8.823
SRP173429	SRR8316895	Juvenile bud stage	13.053
	SRR8316896	Juvenile bud stage	15.949
	SRR8316897	Juvenile bud stage	7.735
	SRR8316894	Third green stage	4.453
	SRR8316900	Third green stage	16.539
	SRR8316901	Third green stage	19.743
	SRR8316898	Complete white stage	3.232
	SRR8316899	Complete white stage	18.745
	SRR8316903	Complete white stage	7.142
	SRR8316902	Silver flowering stage	24.930
	SRR8316904	Silver flowering stage	15.801
	SRR8316905	Silver flowering stage	1.010
	SRR8316906	Gold flowering stage	6.114
	SRR8316907	Gold flowering stage	37.834
	SRR8316908	Gold flowering stage	12.900
SRP132670	SRR6706286	Control	1.389
	SRR6706287	Light intensity 50%	1.838
	SRR6706288	Light intensity 20%	2.137
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	100.588
	CNS0095593	Slightly white alabastrum(diploid) 2	85.188
	CNS0095594	Slightly white alabastrum(diploid) 3	51.439
	CNS0095595	Whole white alabastrum(diploid) 2	54.719
	CNS0095596	Whole white alabastrum(diploid) 3	43.311
	CNS0095597	Whole white alabastrum(diploid) 4	37.747
	CNS0095598	Silvery flower (diploied) 1	32.944
	CNS0095599	Silvery flower (diploied) 2	49.407
	CNS0095600	Silvery flower (diploied) 3	31.171
	CNS0095601	Golden flower (diploid) 1	10.456
	CNS0095602	Golden flower (diploid) 2	20.108
	CNS0095603	Golden flower (diploid) 3	19.566
	CNS0095604	Slightly white alabastrum(tetraploid) 1	77.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.115
	CNS0095606	Slightly white alabastrum(tetraploid) 3	98.309
	CNS0095607	Whole white alabastrum(tetraploid) 1	57.190
	CNS0095608	Whole white alabastrum(tetraploid) 2	104.701
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.225
	CNS0095610	Silvery flower (tetraploid) 1	17.871
	CNS0095611	Silvery flower (tetraploid) 2	15.354
	CNS0095612	Silvery flower (tetraploid) 3	28.718
	CNS0095613	Golden flower (tetraploid) 1	30.268
	CNS0095614	Golden flower (tetraploid) 2	16.518
	CNS0095615	Golden flower (tetraploid) 3	4.499
CRA001975	CRR073297	Stem 1	43.929
	CRR073298	Stem 2	29.037
	CRR073299	Stem 3	7.227
	CRR073300	Leaf 1	15.588
	CRR073301	Leaf 2	26.769
	CRR073302	Leaf 3	4.802
	CRR073303	Juvenile bud 1	14.495
	CRR073304	Juvenile bud 2	2.274
	CRR073305	Juvenile bud 3	14.233
	CRR073306	Third green 1	5.570
	CRR073307	Third green 2	7.066
	CRR073308	Third green 3	8.614
	CRR073309	Second white 1	5.660
	CRR073310	Second white 2	5.403
	CRR073311	Second white 3	5.832
	CRR073312	Silver flowering 1	13.680
	CRR073313	Silver flowering 2	14.339
	CRR073314	Silver flowering 3	17.102
	CRR073315	Gold flowering 1	0.008
	CRR073316	Gold flowering 2	0.044
	CRR073317	Gold flowering 3	0.063
	CRR073318	Tawny withering 1	0.022
	CRR073319	Tawny withering 2	0.015
	CRR073320	Tawny withering 3	0.022