Gene detail

Detail information of GWHGAAZE021994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26350.3	0	unnamed protein product [Vitis vinifera]
COG	YP_003372407.1	1E-19	serine/threonine protein kinase
Swissprot	tr\|O22808\|LYK5_ARATH	2E-62	Protein LYK5 (Precursor)
trEMBL	tr\|B9RTG0\|B9RTG0_RICCO	0	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF45192.1}
TAIR10	AT2G33580.1	5E-57	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65375450	65379084	+
GWHAAZE00000006	mRNA	65375450	65379084	+
GWHAAZE00000006	exon	65375450	65375940	+
GWHAAZE00000006	exon	65376292	65376592	+
GWHAAZE00000006	exon	65378350	65379084	+
GWHAAZE00000006	CDS	65375450	65375940	+
GWHAAZE00000006	CDS	65376292	65376592	+
GWHAAZE00000006	CDS	65378350	65379084	+

Transcript Sequence
>GWHTAAZE022020 ATGAGACCAAATCTCAAAACCCTCTCTTCACTACTAATCTTCTACCTATTCTACAATTCACTAGCCCAAGAACCATCCACAACTGGCTACACCTGCACCCCAAACCAAACCACTTCACCATGCCAAGCCTACGCCTTCTACCGAGCCTCAGCTCCGGACCACCTCGACCTTGCCTCGATAGCTGATCTCTTCTCTGTGAGCCGATTGATGATCGCCAACCCAAGCAACATATCTGATCCAACCTCACCTCTCGTCCCTGATCAATCCCTCTTTGTTCCCCTCACTTGTTCATGCAATCGCATCAATACTACTTACAGCCTCTCCTATGCTAACCTTACCTATACAATCAAGAGAGACGACACCTTTTACCTTGTATCAACTAACCACTTCCGGAATCTGACCACTTACCAATCAGTTCAGGTTGTTAATCCCAACCTGGTCCCAACCCTCCTCGATATTGGAGCAAATGTCATTTTCCCAATCTTTTGCAAAGAGTCTTTGTTGAGAAAAAGGAGAGGAATGGAGACAGGTTTGGAAAATGGGGGAAAGGAATTTGGGGGGAAAGGGAAAGTGGGGTTGAAGGAATTGGAGGGGAATTTGATGGCTGATGTATCAGATTGTTTGGATAAGTATAGGGTGTTTGGGATTGAGGAATTGAGAGAAGCAACTGATGGGTTTGATGACAAGTGTTTGATACAAGGGTCTGTGTACAAAGGTTGTATTGATGGAGAATTCTATGCTATCAAGAAGATGAAGTGGGATGCTTGTGATGAACTCAAGATCTTACAAAAGGTAAACCATGGCAATCTGGTGAAGCTAGAGGGCTTTTGTATAGACCCAAAAGATGCAAACTGTTACCTAATTTATGAGTATGTCCAAAATGGCTCTCTCTATTCATGGTTGCACACAAACAAGACTGAAAAACTTAGTTGGAAAACAAGATTAAGAATCGCCATTGACGTTGCCAACGGCCTCCAATACGTTCACGAACACACTAGACCACGCGTCGTCCACAAAGACATCAAGACTAGCAACATCCTCCTTGACGCCAACATGCGGGCAAAGATTGCCAACTTTGGACTAGCAAAATCTGGATGCAATGCCATAACAATGCACATAGTTGGTACTCAAGGCTACATTGCCCCTGAATACTTGACTGATGGCGTCGTTTCAACGAGAATGGATGTTTTCTCCTTTGGGGTGGTATTGCTCGAGCTGGTTTCGGGGAAAGAAGCAATCGATGAAGAGGGAAAGGTATTGTGGGCCAAGGTAAGTGGGATTTTGGAAGGGAGAGAAGATGAGAAGGTGAAGAGAGTGAAGAAATTGATGGACGATGTTCTTGTTAGGGAATCGTGTTCGATGGAAAGTGTGATGAATGTTGTGGCCGTGGCTACTGCATGTTTACATAGAGATCCTTCAAAGAGGCCTGCTATGGTGGACATCGTCTACGCACTGTGTAAGAGTGATGAATTGTTTTTTGATATATCTGAGGATGGATTGTCACCGCGACAAGTAATAGCAAGATAA

Network for GWHGAAZE021994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	234	482	1.80E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.094
	SRR3591706	second leaf	4.899
	SRR3591707	mature leaf	4.452
	SRR3591708	Shoot apex	15.644
	SRR3591709	Stem	25.679
	SRR3591710	White floral bud	26.266
	SRR3591711	White flower	38.907
	SRR3591712	Green floral bud	20.966
	SRR3591713	Yellow flower	35.351
SRP173429	SRR8316895	Juvenile bud stage	4.658
	SRR8316896	Juvenile bud stage	5.240
	SRR8316897	Juvenile bud stage	6.214
	SRR8316894	Third green stage	2.409
	SRR8316900	Third green stage	4.204
	SRR8316901	Third green stage	5.082
	SRR8316898	Complete white stage	4.480
	SRR8316899	Complete white stage	10.527
	SRR8316903	Complete white stage	7.545
	SRR8316902	Silver flowering stage	7.836
	SRR8316904	Silver flowering stage	9.574
	SRR8316905	Silver flowering stage	5.605
	SRR8316906	Gold flowering stage	22.630
	SRR8316907	Gold flowering stage	19.260
	SRR8316908	Gold flowering stage	33.898
SRP132670	SRR6706286	Control	11.996
	SRR6706287	Light intensity 50%	10.366
	SRR6706288	Light intensity 20%	9.547
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.897
	CNS0095593	Slightly white alabastrum(diploid) 2	6.531
	CNS0095594	Slightly white alabastrum(diploid) 3	8.335
	CNS0095595	Whole white alabastrum(diploid) 2	6.051
	CNS0095596	Whole white alabastrum(diploid) 3	4.592
	CNS0095597	Whole white alabastrum(diploid) 4	5.055
	CNS0095598	Silvery flower (diploied) 1	11.902
	CNS0095599	Silvery flower (diploied) 2	11.442
	CNS0095600	Silvery flower (diploied) 3	16.836
	CNS0095601	Golden flower (diploid) 1	12.915
	CNS0095602	Golden flower (diploid) 2	19.544
	CNS0095603	Golden flower (diploid) 3	19.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.888
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.599
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.384
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.230
	CNS0095610	Silvery flower (tetraploid) 1	39.318
	CNS0095611	Silvery flower (tetraploid) 2	35.794
	CNS0095612	Silvery flower (tetraploid) 3	24.791
	CNS0095613	Golden flower (tetraploid) 1	22.187
	CNS0095614	Golden flower (tetraploid) 2	35.411
	CNS0095615	Golden flower (tetraploid) 3	27.272
CRA001975	CRR073297	Stem 1	11.070
	CRR073298	Stem 2	9.742
	CRR073299	Stem 3	10.969
	CRR073300	Leaf 1	10.622
	CRR073301	Leaf 2	12.280
	CRR073302	Leaf 3	7.219
	CRR073303	Juvenile bud 1	7.951
	CRR073304	Juvenile bud 2	7.893
	CRR073305	Juvenile bud 3	16.136
	CRR073306	Third green 1	17.960
	CRR073307	Third green 2	18.862
	CRR073308	Third green 3	18.671
	CRR073309	Second white 1	15.884
	CRR073310	Second white 2	14.974
	CRR073311	Second white 3	11.230
	CRR073312	Silver flowering 1	17.170
	CRR073313	Silver flowering 2	19.415
	CRR073314	Silver flowering 3	17.614
	CRR073315	Gold flowering 1	6.086
	CRR073316	Gold flowering 2	7.727
	CRR073317	Gold flowering 3	5.887
	CRR073318	Tawny withering 1	18.353
	CRR073319	Tawny withering 2	16.182
	CRR073320	Tawny withering 3	10.442