Gene detail

Detail information of GWHGAAZE022011

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99163.1	1.77339E-51	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FIX5\|BH092_ARATH	9E-36	Transcription factor bHLH92
trEMBL	tr\|A0A068TV08\|A0A068TV08_COFCA	7E-52	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99163.1}
TAIR10	AT5G43650.1	3E-25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65637600	65638563	+
GWHAAZE00000006	mRNA	65637600	65638563	+
GWHAAZE00000006	exon	65637600	65637923	+
GWHAAZE00000006	exon	65638185	65638484	+
GWHAAZE00000006	exon	65638561	65638563	+
GWHAAZE00000006	CDS	65637600	65637923	+
GWHAAZE00000006	CDS	65638185	65638484	+
GWHAAZE00000006	CDS	65638561	65638563	+

Transcript Sequence
>GWHTAAZE022037 ATGGAAGAGTTCTTTCAATATGATACTCAAGATTACACGTCTTGGTTTCAAGGGGTTGTTCCAGTGATTAATCAAAGTGCTTTTGTAAATTATGAAAATAGAGGAAGCTCAATGAAGGGTCCAATTTTGGGTTCGAGTAATCGCAATATACACAAGAGAATGATGGAGATGTTGATTAAAATGAGGCGGATTCCGGTGGCCGGAGGGGAGCCCCAGCCAGAGATAGAGCAGTGTCAGCGGCATATGATTAGTGAGAGGATGAGGAGAAAGAAGCAGAAGCAGTGTTATTTGGCCTTGCACTCTTTGTTACCCTCTGGAACTAAGAGTGATAAGAATTCGATTATTCAAAGCGCGGTGAAGAAAATTGAAGAGCTGGAGAGAGTGAAGTTGGAATTGGAGAGGAAGAACAGTGAGGTTGAGGATGTTTTGAGTAAGATAAAATGTGAGGACAAAGTGGCAGAAGAGGGTGCTAAGATCAAATTAAAAGTGGCACAGCCTTCATCTGGGGTTGATTCTATTCTGGAGGTTATAAAATGCTTGAAAGAAACTAGGACCCAAATCAGATCCATTCAATCAACAATTTCAGCACAGGAATTATCTGCTGTTCTAGAGGTTGAAACCAAGTGA

Network for GWHGAAZE022011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	77	126	9.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.225
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.133
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.593
	SRR3591710	White floral bud	1.237
	SRR3591711	White flower	0.291
	SRR3591712	Green floral bud	0.798
	SRR3591713	Yellow flower	1.404
SRP173429	SRR8316895	Juvenile bud stage	6.852
	SRR8316896	Juvenile bud stage	0.517
	SRR8316897	Juvenile bud stage	3.883
	SRR8316894	Third green stage	0.092
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.402
	SRR8316898	Complete white stage	0.130
	SRR8316899	Complete white stage	2.095
	SRR8316903	Complete white stage	0.156
	SRR8316902	Silver flowering stage	0.514
	SRR8316904	Silver flowering stage	1.040
	SRR8316905	Silver flowering stage	0.379
	SRR8316906	Gold flowering stage	6.068
	SRR8316907	Gold flowering stage	1.692
	SRR8316908	Gold flowering stage	7.881
SRP132670	SRR6706286	Control	0.604
	SRR6706287	Light intensity 50%	1.549
	SRR6706288	Light intensity 20%	0.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.090
	CNS0095593	Slightly white alabastrum(diploid) 2	2.867
	CNS0095594	Slightly white alabastrum(diploid) 3	7.852
	CNS0095595	Whole white alabastrum(diploid) 2	3.636
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.775
	CNS0095598	Silvery flower (diploied) 1	6.611
	CNS0095599	Silvery flower (diploied) 2	9.393
	CNS0095600	Silvery flower (diploied) 3	4.651
	CNS0095601	Golden flower (diploid) 1	7.559
	CNS0095602	Golden flower (diploid) 2	7.778
	CNS0095603	Golden flower (diploid) 3	6.504
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.359
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.132
	CNS0095613	Golden flower (tetraploid) 1	0.773
	CNS0095614	Golden flower (tetraploid) 2	0.699
	CNS0095615	Golden flower (tetraploid) 3	0.358
CRA001975	CRR073297	Stem 1	1.715
	CRR073298	Stem 2	0.489
	CRR073299	Stem 3	0.405
	CRR073300	Leaf 1	0.014
	CRR073301	Leaf 2	0.213
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.143
	CRR073304	Juvenile bud 2	0.600
	CRR073305	Juvenile bud 3	0.006
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.218
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	1.148
	CRR073312	Silver flowering 1	1.403
	CRR073313	Silver flowering 2	0.238
	CRR073314	Silver flowering 3	0.752
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	2.496
	CRR073317	Gold flowering 3	2.660
	CRR073318	Tawny withering 1	0.207
	CRR073319	Tawny withering 2	12.184
	CRR073320	Tawny withering 3	0.266