Detail information of GWHGAAZE022012


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002517015.11.24771E-9840S ribosomal protein S15, putative [Ricinus communis]
COGYP_003650076.16E-4230S ribosomal protein S19
Swissprottr|P31674|RS15_ORYSJ7E-9640S ribosomal protein S15
trEMBLtr|B9RTE6|B9RTE6_RICCO5E-9940S ribosomal protein S15, putative {ECO:0000313|EMBL:EEF45178.1}
TAIR10AT5G09500.11E-70Ribosomal protein S19 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6564249265645837-
GWHAAZE00000006mRNA6564249265645837-
GWHAAZE00000006exon6564583565645837-
GWHAAZE00000006exon6564557365645718-
GWHAAZE00000006exon6564542565645482-
GWHAAZE00000006exon6564249265642740-
GWHAAZE00000006CDS6564583565645837-
GWHAAZE00000006CDS6564557365645718-
GWHAAZE00000006CDS6564542565645482-
GWHAAZE00000006CDS6564249265642740-
Transcript Sequence

Network for GWHGAAZE022012

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00203.22Ribosomal_S19491342.80E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02958RP-S15e, RPS15 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf438.533
SRR3591706second leaf170.826
SRR3591707mature leaf94.896
SRR3591708Shoot apex540.258
SRR3591709Stem202.723
SRR3591710White floral bud184.900
SRR3591711White flower264.366
SRR3591712Green floral bud290.390
SRR3591713Yellow flower207.922
SRP173429 SRR8316895Juvenile bud stage 194.435
SRR8316896Juvenile bud stage 253.779
SRR8316897Juvenile bud stage 135.081
SRR8316894Third green stage 94.248
SRR8316900Third green stage 321.113
SRR8316901Third green stage 325.347
SRR8316898Complete white stage 74.108
SRR8316899Complete white stage 277.992
SRR8316903Complete white stage 112.587
SRR8316902Silver flowering stage103.149
SRR8316904Silver flowering stage93.038
SRR8316905Silver flowering stage46.047
SRR8316906Gold flowering stage 152.482
SRR8316907Gold flowering stage 160.909
SRR8316908Gold flowering stage 177.521
SRP132670SRR6706286Control349.588
SRR6706287Light intensity 50%336.826
SRR6706288Light intensity 20%362.299
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1426.103
CNS0095593Slightly white alabastrum(diploid) 2488.386
CNS0095594Slightly white alabastrum(diploid) 3422.404
CNS0095595Whole white alabastrum(diploid) 2318.929
CNS0095596Whole white alabastrum(diploid) 3392.126
CNS0095597Whole white alabastrum(diploid) 4244.438
CNS0095598Silvery flower (diploied) 1202.567
CNS0095599Silvery flower (diploied) 2206.634
CNS0095600Silvery flower (diploied) 3163.170
CNS0095601Golden flower (diploid) 1161.691
CNS0095602Golden flower (diploid) 2154.122
CNS0095603Golden flower (diploid) 3147.593
CNS0095604Slightly white alabastrum(tetraploid) 1358.758
CNS0095605Slightly white alabastrum(tetraploid) 2383.454
CNS0095606Slightly white alabastrum(tetraploid) 3376.976
CNS0095607Whole white alabastrum(tetraploid) 1191.303
CNS0095608Whole white alabastrum(tetraploid) 2160.289
CNS0095609Whole white alabastrum(tetraploid) 3266.372
CNS0095610Silvery flower (tetraploid) 1161.301
CNS0095611Silvery flower (tetraploid) 2129.961
CNS0095612Silvery flower (tetraploid) 3116.122
CNS0095613Golden flower (tetraploid) 1130.819
CNS0095614Golden flower (tetraploid) 2150.599
CNS0095615Golden flower (tetraploid) 3130.954
CRA001975CRR073297Stem 1283.890
CRR073298Stem 2301.966
CRR073299Stem 3334.012
CRR073300Leaf 1261.074
CRR073301Leaf 2287.900
CRR073302Leaf 3318.339
CRR073303Juvenile bud 1249.605
CRR073304Juvenile bud 2197.021
CRR073305Juvenile bud 3213.135
CRR073306Third green 181.283
CRR073307Third green 291.263
CRR073308Third green 385.249
CRR073309Second white 1108.578
CRR073310Second white 283.721
CRR073311Second white 351.133
CRR073312Silver flowering 197.619
CRR073313Silver flowering 2133.393
CRR073314Silver flowering 384.551
CRR073315Gold flowering 1160.200
CRR073316Gold flowering 2170.430
CRR073317Gold flowering 3157.013
CRR073318Tawny withering 1298.784
CRR073319Tawny withering 2245.295
CRR073320Tawny withering 3327.529