Detail information of GWHGAAZE022033


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004234234.20PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Solanum lycopersicum]
COGYP_005371783.11E-36SNF2/helicase domain-containing protein
Swissprottr|Q9FIY7|SM3L3_ARATH0Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
trEMBLtr|K4BDX0|K4BDX0_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g005460.2.1}
TAIR10AT5G43530.10Helicase protein with RING/U-box domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6602499366031836-
GWHAAZE00000006mRNA6602499366031836-
GWHAAZE00000006exon6602499366025115-
GWHAAZE00000006exon6602578766025885-
GWHAAZE00000006exon6602597366026044-
GWHAAZE00000006exon6602614066026701-
GWHAAZE00000006exon6602694466027056-
GWHAAZE00000006exon6602721266027311-
GWHAAZE00000006exon6602741566027537-
GWHAAZE00000006exon6602766466027731-
GWHAAZE00000006exon6602790466028056-
GWHAAZE00000006exon6602814566028288-
GWHAAZE00000006exon6602839666028620-
GWHAAZE00000006exon6602878466028868-
GWHAAZE00000006exon6602900766029158-
GWHAAZE00000006exon6602927666029425-
GWHAAZE00000006exon6603007366030126-
GWHAAZE00000006exon6603023366030368-
GWHAAZE00000006exon6603046866030601-
GWHAAZE00000006exon6603089866031836-
GWHAAZE00000006CDS6603089866031836-
GWHAAZE00000006CDS6603046866030601-
GWHAAZE00000006CDS6603023366030368-
GWHAAZE00000006CDS6603007366030126-
GWHAAZE00000006CDS6602927666029425-
GWHAAZE00000006CDS6602900766029158-
GWHAAZE00000006CDS6602878466028868-
GWHAAZE00000006CDS6602839666028620-
GWHAAZE00000006CDS6602814566028288-
GWHAAZE00000006CDS6602790466028056-
GWHAAZE00000006CDS6602766466027731-
GWHAAZE00000006CDS6602741566027537-
GWHAAZE00000006CDS6602721266027311-
GWHAAZE00000006CDS6602694466027056-
GWHAAZE00000006CDS6602614066026701-
GWHAAZE00000006CDS6602597366026044-
GWHAAZE00000006CDS6602578766025885-
GWHAAZE00000006CDS6602499366025115-
Transcript Sequence

Network for GWHGAAZE022033

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08797.12HIRAN2713562.10E-10
PF00176.24SNF2_N4868571.60E-85
PF00097.26zf-C3HC49089473.50E-09
PF00271.32Helicase_C97810909.10E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
GO:0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.888
SRR3591706second leaf2.065
SRR3591707mature leaf1.345
SRR3591708Shoot apex15.169
SRR3591709Stem5.300
SRR3591710White floral bud2.840
SRR3591711White flower1.751
SRR3591712Green floral bud1.700
SRR3591713Yellow flower0.918
SRP173429 SRR8316895Juvenile bud stage 1.894
SRR8316896Juvenile bud stage 1.311
SRR8316897Juvenile bud stage 1.031
SRR8316894Third green stage 0.636
SRR8316900Third green stage 1.260
SRR8316901Third green stage 0.943
SRR8316898Complete white stage 0.291
SRR8316899Complete white stage 1.100
SRR8316903Complete white stage 0.556
SRR8316902Silver flowering stage0.148
SRR8316904Silver flowering stage0.369
SRR8316905Silver flowering stage0.161
SRR8316906Gold flowering stage 0.563
SRR8316907Gold flowering stage 0.313
SRR8316908Gold flowering stage 0.469
SRP132670SRR6706286Control1.013
SRR6706287Light intensity 50%1.105
SRR6706288Light intensity 20%1.058
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.315
CNS0095593Slightly white alabastrum(diploid) 21.359
CNS0095594Slightly white alabastrum(diploid) 31.239
CNS0095595Whole white alabastrum(diploid) 20.211
CNS0095596Whole white alabastrum(diploid) 30.494
CNS0095597Whole white alabastrum(diploid) 40.271
CNS0095598Silvery flower (diploied) 11.252
CNS0095599Silvery flower (diploied) 21.855
CNS0095600Silvery flower (diploied) 30.915
CNS0095601Golden flower (diploid) 10.693
CNS0095602Golden flower (diploid) 20.660
CNS0095603Golden flower (diploid) 30.454
CNS0095604Slightly white alabastrum(tetraploid) 11.380
CNS0095605Slightly white alabastrum(tetraploid) 21.779
CNS0095606Slightly white alabastrum(tetraploid) 34.330
CNS0095607Whole white alabastrum(tetraploid) 10.942
CNS0095608Whole white alabastrum(tetraploid) 20.188
CNS0095609Whole white alabastrum(tetraploid) 31.135
CNS0095610Silvery flower (tetraploid) 10.794
CNS0095611Silvery flower (tetraploid) 20.878
CNS0095612Silvery flower (tetraploid) 30.584
CNS0095613Golden flower (tetraploid) 10.434
CNS0095614Golden flower (tetraploid) 20.549
CNS0095615Golden flower (tetraploid) 30.173
CRA001975CRR073297Stem 13.251
CRR073298Stem 22.325
CRR073299Stem 33.099
CRR073300Leaf 11.133
CRR073301Leaf 21.195
CRR073302Leaf 30.782
CRR073303Juvenile bud 10.747
CRR073304Juvenile bud 20.350
CRR073305Juvenile bud 31.387
CRR073306Third green 10.106
CRR073307Third green 20.286
CRR073308Third green 30.193
CRR073309Second white 10.187
CRR073310Second white 20.073
CRR073311Second white 30.275
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.034
CRR073314Silver flowering 30.046
CRR073315Gold flowering 10.374
CRR073316Gold flowering 20.495
CRR073317Gold flowering 30.335
CRR073318Tawny withering 17.431
CRR073319Tawny withering 24.590
CRR073320Tawny withering 35.046