Detail information of GWHGAAZE022046


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268486.13.29947E-35PREDICTED: F-box/kelch-repeat protein At3g06240-like [Vitis vinifera]
Swissprottr|Q8GXC7|FBK50_ARATH7E-28F-box/kelch-repeat protein At3g06240
trEMBLtr|F6I3R8|F6I3R8_VITVI1E-35Putative uncharacterized protein {ECO:0000313|EMBL:CCB61586.1}
TAIR10AT3G06240.13E-22F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6615588866156847-
GWHAAZE00000006mRNA6615588866156847-
GWHAAZE00000006exon6615588866156847-
GWHAAZE00000006CDS6615588866156847-
Transcript Sequence

Network for GWHGAAZE022046

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box6444.20E-09
PF08268.13FBA_31933041.60E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.811
SRR3591706second leaf0.111
SRR3591707mature leaf0.744
SRR3591708Shoot apex0.405
SRR3591709Stem0.962
SRR3591710White floral bud1.578
SRR3591711White flower0.992
SRR3591712Green floral bud1.764
SRR3591713Yellow flower0.330
SRP173429 SRR8316895Juvenile bud stage 1.985
SRR8316896Juvenile bud stage 3.030
SRR8316897Juvenile bud stage 0.621
SRR8316894Third green stage 1.308
SRR8316900Third green stage 4.293
SRR8316901Third green stage 2.775
SRR8316898Complete white stage 0.554
SRR8316899Complete white stage 2.336
SRR8316903Complete white stage 1.457
SRR8316902Silver flowering stage0.607
SRR8316904Silver flowering stage1.678
SRR8316905Silver flowering stage0.636
SRR8316906Gold flowering stage 1.465
SRR8316907Gold flowering stage 2.395
SRR8316908Gold flowering stage 0.870
SRP132670SRR6706286Control1.646
SRR6706287Light intensity 50%2.072
SRR6706288Light intensity 20%2.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.753
CNS0095593Slightly white alabastrum(diploid) 21.245
CNS0095594Slightly white alabastrum(diploid) 30.867
CNS0095595Whole white alabastrum(diploid) 20.680
CNS0095596Whole white alabastrum(diploid) 30.476
CNS0095597Whole white alabastrum(diploid) 40.415
CNS0095598Silvery flower (diploied) 12.898
CNS0095599Silvery flower (diploied) 21.234
CNS0095600Silvery flower (diploied) 32.574
CNS0095601Golden flower (diploid) 11.158
CNS0095602Golden flower (diploid) 22.754
CNS0095603Golden flower (diploid) 33.502
CNS0095604Slightly white alabastrum(tetraploid) 10.299
CNS0095605Slightly white alabastrum(tetraploid) 20.184
CNS0095606Slightly white alabastrum(tetraploid) 30.354
CNS0095607Whole white alabastrum(tetraploid) 10.062
CNS0095608Whole white alabastrum(tetraploid) 20.254
CNS0095609Whole white alabastrum(tetraploid) 30.453
CNS0095610Silvery flower (tetraploid) 10.544
CNS0095611Silvery flower (tetraploid) 20.285
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.165
CNS0095614Golden flower (tetraploid) 20.273
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.201
CRR073298Stem 21.622
CRR073299Stem 30.046
CRR073300Leaf 12.243
CRR073301Leaf 21.722
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.029
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.359
CRR073316Gold flowering 20.101
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.388
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.372