Detail information of GWHGAAZE022054


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007035090.19.6328E-127RING/U-box superfamily protein [Theobroma cacao]
Swissprottr|Q9LSW9|ATL16_ARATH4E-87RING-H2 finger protein ATL16
trEMBLtr|A0A061EMD3|A0A061EMD3_THECC4E-127RING/U-box superfamily protein {ECO:0000313|EMBL:EOY06016.1}
TAIR10AT5G43420.11E-66RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6623217566233149-
GWHAAZE00000006mRNA6623217566233149-
GWHAAZE00000006exon6623217566233149-
GWHAAZE00000006CDS6623217566233149-
Transcript Sequence

Network for GWHGAAZE022054

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21261695.30E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.645
SRR3591706second leaf0.467
SRR3591707mature leaf0.184
SRR3591708Shoot apex0.568
SRR3591709Stem0.815
SRR3591710White floral bud1.767
SRR3591711White flower0.768
SRR3591712Green floral bud1.905
SRR3591713Yellow flower0.262
SRP173429 SRR8316895Juvenile bud stage 0.380
SRR8316896Juvenile bud stage 0.522
SRR8316897Juvenile bud stage 0.201
SRR8316894Third green stage 0.459
SRR8316900Third green stage 1.783
SRR8316901Third green stage 0.522
SRR8316898Complete white stage 0.341
SRR8316899Complete white stage 1.935
SRR8316903Complete white stage 1.331
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.071
SRR8316905Silver flowering stage0.086
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.256
SRR8316908Gold flowering stage 0.077
SRP132670SRR6706286Control1.100
SRR6706287Light intensity 50%1.182
SRR6706288Light intensity 20%1.385
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.859
CNS0095593Slightly white alabastrum(diploid) 20.885
CNS0095594Slightly white alabastrum(diploid) 30.311
CNS0095595Whole white alabastrum(diploid) 21.029
CNS0095596Whole white alabastrum(diploid) 31.148
CNS0095597Whole white alabastrum(diploid) 40.388
CNS0095598Silvery flower (diploied) 10.153
CNS0095599Silvery flower (diploied) 20.138
CNS0095600Silvery flower (diploied) 30.085
CNS0095601Golden flower (diploid) 10.075
CNS0095602Golden flower (diploid) 20.198
CNS0095603Golden flower (diploid) 30.038
CNS0095604Slightly white alabastrum(tetraploid) 10.822
CNS0095605Slightly white alabastrum(tetraploid) 20.633
CNS0095606Slightly white alabastrum(tetraploid) 31.240
CNS0095607Whole white alabastrum(tetraploid) 10.863
CNS0095608Whole white alabastrum(tetraploid) 20.802
CNS0095609Whole white alabastrum(tetraploid) 30.817
CNS0095610Silvery flower (tetraploid) 10.295
CNS0095611Silvery flower (tetraploid) 20.308
CNS0095612Silvery flower (tetraploid) 30.547
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.136
CNS0095615Golden flower (tetraploid) 30.195
CRA001975CRR073297Stem 11.932
CRR073298Stem 21.808
CRR073299Stem 31.121
CRR073300Leaf 11.157
CRR073301Leaf 21.688
CRR073302Leaf 31.860
CRR073303Juvenile bud 10.457
CRR073304Juvenile bud 21.568
CRR073305Juvenile bud 31.955
CRR073306Third green 10.094
CRR073307Third green 20.581
CRR073308Third green 30.112
CRR073309Second white 10.081
CRR073310Second white 20.138
CRR073311Second white 30.034
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.571
CRR073316Gold flowering 21.026
CRR073317Gold flowering 31.621
CRR073318Tawny withering 13.389
CRR073319Tawny withering 21.712
CRR073320Tawny withering 37.444