Gene detail

Detail information of GWHGAAZE022061

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	3.53237E-36	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LIR8\|FBK67_ARATH	2E-26	F-box/kelch-repeat protein At3g23880
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-36	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT3G23880.1	9E-24	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66348316	66349299	+
GWHAAZE00000006	mRNA	66348316	66349299	+
GWHAAZE00000006	exon	66348316	66349299	+
GWHAAZE00000006	CDS	66348316	66349299	+

Transcript Sequence
>GWHTAAZE022089 ATGTCTCGACACATAGTTTATGAGATTGTGGTTGAAGTCCTCTCCAGATTACCCGTGAAGTCTCTCTTACGTTTTAAATCCGTGTCCAAAGAATGGCACTCAATAATCACAGATCCCGAATTTGTTTCACTACACCTTAATCGATCCTGGCAAAGACCCGGGGCCATCACCGCCTTCTTAACTCCTGACGACACTCCCTCTTTTCACTCCATTAACCATCAAGCTTCAGTACAAGAAATCACAGATCTCGCATGGACAGATCCCAGCACAGGAAGTAGTTACACCAATTTCAAAATCATAGGTTCATGTAATGGGTTCCTCTTCATCAACTCCGATTGCAATTGGTTCTTATGGAACCCATCCACAAGGTCCGCTGTGCAAGTTCAGAGCCTAATGTTAGGAATACACGATTTTGCTCTACACGGGTTCGGTTACAATTCTCATGATGATGATTACAAGGCAGTGGTGGGTCATACTACGGGCTACCCTGAGACAATATGGGCAACTGTTTATAGTTTGAAATCCAATTCTTGGAATCCCATTCGGAATATCCCCTTTCGTACCGATCACAGCGGGTTAGGGACCCTTGTGAATGGTTTTCTGCATTGGAAAATTGGGTACGGATTTGCATTGGACGGGTACAAGATCTTTTGTCTGGACTTGGGGGAGGATGAATTCAAGGAGGTGCCTCAGCCCGATATGTTTCGTATTGGGAGGGGTTTTCAGTGGCAATTATTTGAGTTTAAGGATATGCTTAACATTTTGGGGAGTTTTGAAGGCAACTACCCGAGGGAGGCTGAGGTATGGTCTATGAAAGAATATGGTCTCAAAGATTCTTGGACTAAGATGTTTGTGGTTCCATATGTAGGACAAATTGGGGGTTCGATTAGTGATCACTATGGGGGTTGGTATTTTGTAGGAAGTGGTGAATTTGCGGTGAAGATAGTTTGGGGAAGGGTGTTAATTATCAGCAAGCTTGAAGAA

Network for GWHGAAZE022061

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	42	2.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.348
	SRR3591706	second leaf	0.129
	SRR3591707	mature leaf	0.097
	SRR3591708	Shoot apex	0.302
	SRR3591709	Stem	0.109
	SRR3591710	White floral bud	0.639
	SRR3591711	White flower	0.185
	SRR3591712	Green floral bud	0.469
	SRR3591713	Yellow flower	0.676
SRP173429	SRR8316895	Juvenile bud stage	1.029
	SRR8316896	Juvenile bud stage	2.407
	SRR8316897	Juvenile bud stage	0.517
	SRR8316894	Third green stage	0.428
	SRR8316900	Third green stage	0.866
	SRR8316901	Third green stage	0.950
	SRR8316898	Complete white stage	0.089
	SRR8316899	Complete white stage	1.076
	SRR8316903	Complete white stage	0.424
	SRR8316902	Silver flowering stage	0.484
	SRR8316904	Silver flowering stage	0.104
	SRR8316905	Silver flowering stage	0.281
	SRR8316906	Gold flowering stage	0.328
	SRR8316907	Gold flowering stage	1.052
	SRR8316908	Gold flowering stage	0.847
SRP132670	SRR6706286	Control	0.755
	SRR6706287	Light intensity 50%	0.989
	SRR6706288	Light intensity 20%	0.867
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.609
	CNS0095593	Slightly white alabastrum(diploid) 2	1.864
	CNS0095594	Slightly white alabastrum(diploid) 3	0.569
	CNS0095595	Whole white alabastrum(diploid) 2	0.373
	CNS0095596	Whole white alabastrum(diploid) 3	0.331
	CNS0095597	Whole white alabastrum(diploid) 4	0.419
	CNS0095598	Silvery flower (diploied) 1	0.331
	CNS0095599	Silvery flower (diploied) 2	0.200
	CNS0095600	Silvery flower (diploied) 3	0.481
	CNS0095601	Golden flower (diploid) 1	1.150
	CNS0095602	Golden flower (diploid) 2	0.643
	CNS0095603	Golden flower (diploid) 3	0.930
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.308
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.955
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.462
	CNS0095610	Silvery flower (tetraploid) 1	0.543
	CNS0095611	Silvery flower (tetraploid) 2	0.378
	CNS0095612	Silvery flower (tetraploid) 3	0.518
	CNS0095613	Golden flower (tetraploid) 1	0.821
	CNS0095614	Golden flower (tetraploid) 2	1.286
	CNS0095615	Golden flower (tetraploid) 3	0.835
CRA001975	CRR073297	Stem 1	0.697
	CRR073298	Stem 2	1.226
	CRR073299	Stem 3	0.267
	CRR073300	Leaf 1	1.984
	CRR073301	Leaf 2	2.324
	CRR073302	Leaf 3	0.412
	CRR073303	Juvenile bud 1	0.549
	CRR073304	Juvenile bud 2	0.117
	CRR073305	Juvenile bud 3	1.194
	CRR073306	Third green 1	1.004
	CRR073307	Third green 2	0.554
	CRR073308	Third green 3	0.602
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.179
	CRR073311	Second white 3	0.143
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.177
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.654
	CRR073316	Gold flowering 2	1.672
	CRR073317	Gold flowering 3	0.785
	CRR073318	Tawny withering 1	1.186
	CRR073319	Tawny withering 2	0.400
	CRR073320	Tawny withering 3	1.253