Gene detail

Detail information of GWHGAAZE022066

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008368874.1	PREDICTED: elongation factor Tu, mitochondrial [Malus domestica]
COG	YP_744373.1	elongation factor Tu
Swissprot	tr\|Q9ZT91\|EFTM_ARATH	Elongation factor Tu, mitochondrial (Precursor)
trEMBL	tr\|A5BV56\|A5BV56_VITVI	Elongation factor Tu {ECO:0000256\|RuleBase:RU004061}
TAIR10	AT4G02930.1	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66397915	66406537	-
GWHAAZE00000006	mRNA	66397915	66406537	-
GWHAAZE00000006	exon	66406356	66406537	-
GWHAAZE00000006	exon	66405423	66405648	-
GWHAAZE00000006	exon	66405120	66405212	-
GWHAAZE00000006	exon	66404934	66405008	-
GWHAAZE00000006	exon	66403908	66404012	-
GWHAAZE00000006	exon	66403679	66403769	-
GWHAAZE00000006	exon	66403329	66403534	-
GWHAAZE00000006	exon	66400544	66400627	-
GWHAAZE00000006	exon	66400277	66400342	-
GWHAAZE00000006	exon	66399858	66399920	-
GWHAAZE00000006	exon	66399455	66399695	-
GWHAAZE00000006	exon	66397915	66398342	-
GWHAAZE00000006	CDS	66406356	66406537	-
GWHAAZE00000006	CDS	66405423	66405648	-
GWHAAZE00000006	CDS	66405120	66405212	-
GWHAAZE00000006	CDS	66404934	66405008	-
GWHAAZE00000006	CDS	66403908	66404012	-
GWHAAZE00000006	CDS	66403679	66403769	-
GWHAAZE00000006	CDS	66403329	66403534	-
GWHAAZE00000006	CDS	66400544	66400627	-
GWHAAZE00000006	CDS	66400277	66400342	-
GWHAAZE00000006	CDS	66399858	66399920	-
GWHAAZE00000006	CDS	66399455	66399695	-
GWHAAZE00000006	CDS	66398272	66398342	-
GWHAAZE00000006	three_prime_UTR	66397915	66398271	-

Transcript Sequence
>GWHTAAZE022094 ATGGCTTCAGTTGCGATCAGAGCCCGTAGTTCAAAGCAATTCTTCTCGCTCATCCCTCCAACCTACTCATCATTATGCTGTCGAGGTCCGAGTTCAACTCAGTGCTTCGACTCGCCGTACGGAAATGCATCAGCTTCGTCTTTCGTTCCATTGTGGCGATCCATGGCTACATTCGCTCGAACCTTGTTTACATTCGATAAGAATCCCATGAGATTGGTCCTCTGTAATTTGCTAACTGGATTTGAGTCTTATCGTTCTACATATCTACACACATATATTAGATTGTTACGTTCACGCCTTTATTTATTCGATGTTCATTTTTATGGTTACAGAAAACCTCACGTGAATGTGGGTACCATTGGACACGTTGACCATGGGAAAACTACATTAACTGCTGCAATCACAAAGGTGCTTGCTGAAGAAGGCAAAGCCAAGGCTATTGCTTTTGATGAGATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACTATTGCTACAGCCCATGTAGAGTATGAAACTGTTAAGCGGCACTATGCACATGTAGATTGCCCCGGACATGCAGACTATGTTAAGAACATGATTACTGGAGCTGCCCAAATGGATGGGGGCATCCTAGTGGTATCTGCGCCGGATGGACCCATGCCTCAGACGAAGGAACATATTCTTCTTGCTCGGCAGGTCGGTGTGCCCTCTTTGGTGTGCTTTCTCAATAAAGTTGATGCAGTTGATGATCCAGAACTACTTGAACTTGTAGAGATGGAACTTCGCGAGTTGCTTAGCTTCTACAAATTTCCTGGCGATGAAATCCCAATCATTCGGGGTTCAGCTTTATCCGCTTTGCAAGGAACAAATGAAGAACTTGGGAAAAAGTCTATCTTAAAACTGATGGAAGCTGTGGATGAATACATAAGTGACCCTGTACACCAGCTTGACAAACCTTTCCTAATGCCAATTGAAGATGTCTTTTCCATCCAGGGGCGTGGGACTGTTGTTACAGGGCGTATTGAACAAGGTACCATCAAGATTGGTGAGGAGGTTGAAGTTCTGGGATTGGTTCTGGATGGGCCTTTGAAGACTACAGTTACCGGTGTTGAGATGTTTAAGAAAAGCTTGGACCATGGGCAGGCTGGTGACAATGTGGGCCTTCTTCTGCGTGGTTTAAAACGTGATGATGTCCAACGAGGACAGGTAGTCTCCAAGCCTGGTACCTTGAAAACATATATGCGGTTTGAGGCGGAGATTTATGTTCTCACAAAAGATGAAGGTGGTCGCCATACCTCGTTCTTCTCAAATTATATGCCTCAATTTTACATGAGGACTGCAGATATTACTGGGAAAGTGGAATTGCCAGAAAATGTTAAGATGGTGATGCCCGGTGATAATGTTACTGCAGTATTTGAGCTGATTTCACCTGTTCCTCTTGAAGCAGGACAAAGATTTGCTTTGAGAGAAGGAGGCAGGACGGTTGGTGCAGGGGTAGTCTCAAAAGTAGTCAGCTGAGATGTTGGACCATTTTTAAAGGCTATCACCTCTTTGAGAAAAGTTTCAATTATTTCAGCATGTAATCACTCTATGACTTGATCCTTGTTTCACTGCAAGTTTTGGTGCCCTTATTTAGATAAGTAAATAAACTAGAATTTTGATTCAAACGGAATAGGCTGGGGACAGGTTCATTTCTGCATTCTGTTGGTAGTGCACAATTGTTCACGGTATTTTCACACACTTCAGCAATGTTTATTTGTTTTTCTTAAAATGAATAATTGTCATTTGAGGGCTTATGTATGTAATTAAGTTTCTATAACTGTCATTGCTTTAATTAACATCATATTTGGTTATCAGAATAATGGACTTACATTG

Network for GWHGAAZE022066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	112	305	6.50E-55
PF03144.26	GTP_EFTU_D2	329	399	3.60E-15
PF03143.18	GTP_EFTU_D3	405	498	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02358	tuf, TUFM	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0003746	molecular_function	translation elongation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.286
	SRR3591706	second leaf	0.114
	SRR3591707	mature leaf	0.364
	SRR3591708	Shoot apex	0.557
	SRR3591709	Stem	0.231
	SRR3591710	White floral bud	2.295
	SRR3591711	White flower	1.148
	SRR3591712	Green floral bud	6.383
	SRR3591713	Yellow flower	0.783
SRP173429	SRR8316895	Juvenile bud stage	8.951
	SRR8316896	Juvenile bud stage	16.282
	SRR8316897	Juvenile bud stage	8.512
	SRR8316894	Third green stage	4.846
	SRR8316900	Third green stage	13.095
	SRR8316901	Third green stage	13.733
	SRR8316898	Complete white stage	1.773
	SRR8316899	Complete white stage	4.130
	SRR8316903	Complete white stage	2.243
	SRR8316902	Silver flowering stage	1.089
	SRR8316904	Silver flowering stage	1.486
	SRR8316905	Silver flowering stage	0.481
	SRR8316906	Gold flowering stage	1.502
	SRR8316907	Gold flowering stage	2.574
	SRR8316908	Gold flowering stage	1.681
SRP132670	SRR6706286	Control	4.523
	SRR6706287	Light intensity 50%	4.594
	SRR6706288	Light intensity 20%	4.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.640
	CNS0095593	Slightly white alabastrum(diploid) 2	9.200
	CNS0095594	Slightly white alabastrum(diploid) 3	16.570
	CNS0095595	Whole white alabastrum(diploid) 2	11.157
	CNS0095596	Whole white alabastrum(diploid) 3	13.092
	CNS0095597	Whole white alabastrum(diploid) 4	8.656
	CNS0095598	Silvery flower (diploied) 1	1.815
	CNS0095599	Silvery flower (diploied) 2	2.218
	CNS0095600	Silvery flower (diploied) 3	1.840
	CNS0095601	Golden flower (diploid) 1	1.853
	CNS0095602	Golden flower (diploid) 2	1.223
	CNS0095603	Golden flower (diploid) 3	1.845
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.463
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.189
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.771
	CNS0095610	Silvery flower (tetraploid) 1	1.837
	CNS0095611	Silvery flower (tetraploid) 2	0.590
	CNS0095612	Silvery flower (tetraploid) 3	0.730
	CNS0095613	Golden flower (tetraploid) 1	0.623
	CNS0095614	Golden flower (tetraploid) 2	0.848
	CNS0095615	Golden flower (tetraploid) 3	0.073
CRA001975	CRR073297	Stem 1	6.926
	CRR073298	Stem 2	5.747
	CRR073299	Stem 3	6.198
	CRR073300	Leaf 1	5.066
	CRR073301	Leaf 2	5.474
	CRR073302	Leaf 3	4.248
	CRR073303	Juvenile bud 1	4.027
	CRR073304	Juvenile bud 2	3.322
	CRR073305	Juvenile bud 3	2.080
	CRR073306	Third green 1	2.548
	CRR073307	Third green 2	3.797
	CRR073308	Third green 3	2.705
	CRR073309	Second white 1	0.531
	CRR073310	Second white 2	0.471
	CRR073311	Second white 3	1.387
	CRR073312	Silver flowering 1	0.659
	CRR073313	Silver flowering 2	2.067
	CRR073314	Silver flowering 3	0.853
	CRR073315	Gold flowering 1	1.269
	CRR073316	Gold flowering 2	2.341
	CRR073317	Gold flowering 3	2.160
	CRR073318	Tawny withering 1	1.384
	CRR073319	Tawny withering 2	0.327
	CRR073320	Tawny withering 3	1.757