Gene detail

Detail information of GWHGAAZE022068

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090823.1	0	PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Sesamum indicum]
COG	YP_003337768.1	1E-109	glutamate--ammonia ligase
Swissprot	tr\|O22506\|GLNA2_DAUCA	0	Glutamine synthetase, chloroplastic (Precursor)
trEMBL	tr\|A0A022S027\|A0A022S027_ERYGU	0	Glutamine synthetase {ECO:0000256\|RuleBase:RU004356}
TAIR10	AT5G35630.3	0	glutamine synthetase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66432418	66436424	+
GWHAAZE00000006	mRNA	66432418	66436424	+
GWHAAZE00000006	exon	66432418	66432674	+
GWHAAZE00000006	exon	66432850	66432889	+
GWHAAZE00000006	exon	66433004	66433107	+
GWHAAZE00000006	exon	66433194	66433242	+
GWHAAZE00000006	exon	66433357	66433463	+
GWHAAZE00000006	exon	66433549	66433636	+
GWHAAZE00000006	exon	66434031	66434159	+
GWHAAZE00000006	exon	66434275	66434349	+
GWHAAZE00000006	exon	66434486	66434539	+
GWHAAZE00000006	exon	66434872	66434909	+
GWHAAZE00000006	exon	66435015	66435174	+
GWHAAZE00000006	exon	66435563	66435623	+
GWHAAZE00000006	exon	66436327	66436424	+
GWHAAZE00000006	CDS	66432418	66432674	+
GWHAAZE00000006	CDS	66432850	66432889	+
GWHAAZE00000006	CDS	66433004	66433107	+
GWHAAZE00000006	CDS	66433194	66433242	+
GWHAAZE00000006	CDS	66433357	66433463	+
GWHAAZE00000006	CDS	66433549	66433636	+
GWHAAZE00000006	CDS	66434031	66434159	+
GWHAAZE00000006	CDS	66434275	66434349	+
GWHAAZE00000006	CDS	66434486	66434539	+
GWHAAZE00000006	CDS	66434872	66434909	+
GWHAAZE00000006	CDS	66435015	66435174	+
GWHAAZE00000006	CDS	66435563	66435623	+
GWHAAZE00000006	CDS	66436327	66436424	+

Transcript Sequence
>GWHTAAZE022096 ATGGCACAGATTTTGGCTCCATCTGCCCAGTGGCAGATGAGATTTACGAGGAACTCAACAACGGATGCAAGCTCCTTGACAACAAAAATGTGGGGTTCTCTTTTCTTGAAACAAAGCAAGAAAGGATCAGTCAAAACCTCTACCAAATTTAGCGTGATGGCACTGAAGTCTGAAAACGGCACCATTAACAGGATTGAGGATCTGCTCAATATGGACATTACTCCATTCACTGACAAGATCATTGCGGAGTATATTTGGATTGGAGGATCTGGTATTGATCTGCGTAGCAAATCAAGGACAATTTCAAAGCCAGTTAAACACCCGTCTGATCTTCCAAAGTGGAATTATGATGGATCAAGCACTGGACAAGCACCGGGAGAAGATAGTGAAGTAATTCTATATCCTCAAGCAATTTTTAAGGACCCATTCCGTGGTGGTAACAATATCTTGGTAATTTGTGACGCCTACACACCACAAGGTGAGCCCATCCCTACAAACAAGCGATACAAGGCTGCTGAGGTTTTCAGTAACTCGAAGGTTGTAGCTGAAGTGCCATGGTATGGAATAGAGCAAGAGTACACCTTACTCCAACCAAATGTCAAGTGGCCTTTGGGTTGGCCAGTTGGAGGCTATCCTGGTCCTCAGGGTCCATACTATTGTGGTGCTGGGGCAGATAAGTCTTTTGGTAGAGACATTTCTGATGCTCATTACAAAGCCTGCCTATATGCTGGGATTAATATAAGTGGAACCAATGGGGAGGTCATGCCTGGCCAGTGGGAATTTCAAGTGGGTCCCAGTGTGGGAATCGAAGCTGGAGATCATGTCTGGTGTGCTAGATACCTCCTTGAGAGAATTACTGAACAAGCTGGTGTTGTTCTCACACTTGACCCAAAACCAATAGAGGGAGACTGGAATGGAGCAGGATGCCACACTAATTACAGTACAAAGAGTATGAGAGAGGAAGGAGGCTATGAAGTAATTAAGAAGGCGATTCATAATCTGTCACTTCGCCACACAGAGCACATCAATGCATATGGAGAAGGAAATGAGAGAAGGTTGACTGGAAAGCATGAAACTGCCAGCATCAACACCTTCTCATGGGGAGTTGCTAATCGTGGTTGCTCAATCCGTGTGGGGCGTGATACTGAGAGGGAAGGCAAAGGTTACTTGGAAGATCGGCGCCCAGCTTCAAACATGGACCCATATACCGTGACAGCATTACTTGCCGAAACTACTCTGCTCTGGGAGCCGAAGCTGTAG

Network for GWHGAAZE022068

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03951.20	Gln-synt_N	84	158	3.20E-10
PF00120.25	Gln-synt_C	229	408	7.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01915	glnA, GLUL	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220
		Two-component system	map02020
		Necroptosis	map04217
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0006542	biological_process	glutamine biosynthetic process
GO:0004356	molecular_function	glutamate-ammonia ligase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.362
	SRR3591706	second leaf	965.379
	SRR3591707	mature leaf	582.086
	SRR3591708	Shoot apex	249.750
	SRR3591709	Stem	34.663
	SRR3591710	White floral bud	17.779
	SRR3591711	White flower	9.503
	SRR3591712	Green floral bud	20.843
	SRR3591713	Yellow flower	2.390
SRP173429	SRR8316895	Juvenile bud stage	60.828
	SRR8316896	Juvenile bud stage	49.976
	SRR8316897	Juvenile bud stage	39.586
	SRR8316894	Third green stage	19.764
	SRR8316900	Third green stage	57.040
	SRR8316901	Third green stage	50.625
	SRR8316898	Complete white stage	16.200
	SRR8316899	Complete white stage	40.943
	SRR8316903	Complete white stage	20.481
	SRR8316902	Silver flowering stage	6.165
	SRR8316904	Silver flowering stage	9.284
	SRR8316905	Silver flowering stage	4.788
	SRR8316906	Gold flowering stage	6.778
	SRR8316907	Gold flowering stage	8.061
	SRR8316908	Gold flowering stage	5.626
SRP132670	SRR6706286	Control	56.530
	SRR6706287	Light intensity 50%	49.733
	SRR6706288	Light intensity 20%	46.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.385
	CNS0095593	Slightly white alabastrum(diploid) 2	19.332
	CNS0095594	Slightly white alabastrum(diploid) 3	19.506
	CNS0095595	Whole white alabastrum(diploid) 2	16.423
	CNS0095596	Whole white alabastrum(diploid) 3	14.130
	CNS0095597	Whole white alabastrum(diploid) 4	10.158
	CNS0095598	Silvery flower (diploied) 1	62.014
	CNS0095599	Silvery flower (diploied) 2	54.686
	CNS0095600	Silvery flower (diploied) 3	15.856
	CNS0095601	Golden flower (diploid) 1	23.347
	CNS0095602	Golden flower (diploid) 2	19.255
	CNS0095603	Golden flower (diploid) 3	18.842
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.700
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.948
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.279
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.714
	CNS0095610	Silvery flower (tetraploid) 1	5.548
	CNS0095611	Silvery flower (tetraploid) 2	8.448
	CNS0095612	Silvery flower (tetraploid) 3	5.155
	CNS0095613	Golden flower (tetraploid) 1	1.159
	CNS0095614	Golden flower (tetraploid) 2	3.655
	CNS0095615	Golden flower (tetraploid) 3	1.719
CRA001975	CRR073297	Stem 1	159.983
	CRR073298	Stem 2	123.421
	CRR073299	Stem 3	179.847
	CRR073300	Leaf 1	45.555
	CRR073301	Leaf 2	48.036
	CRR073302	Leaf 3	50.733
	CRR073303	Juvenile bud 1	38.617
	CRR073304	Juvenile bud 2	24.391
	CRR073305	Juvenile bud 3	40.226
	CRR073306	Third green 1	8.347
	CRR073307	Third green 2	7.818
	CRR073308	Third green 3	7.011
	CRR073309	Second white 1	6.715
	CRR073310	Second white 2	3.973
	CRR073311	Second white 3	1.881
	CRR073312	Silver flowering 1	0.834
	CRR073313	Silver flowering 2	2.275
	CRR073314	Silver flowering 3	2.338
	CRR073315	Gold flowering 1	805.666
	CRR073316	Gold flowering 2	1118.524
	CRR073317	Gold flowering 3	799.285
	CRR073318	Tawny withering 1	19.779
	CRR073319	Tawny withering 2	23.496
	CRR073320	Tawny withering 3	20.439