Gene detail

Detail information of GWHGAAZE022075

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98960.1	1.307E-172	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q3E9D5\|DCAM4_ARATH	4E-134	S-adenosylmethionine decarboxylase 1 beta chain {ECO:0000250\|UniProtKB:P17707} (Precursor)
trEMBL	tr\|A0A068TRL8\|A0A068TRL8_COFCA	5E-173	S-adenosylmethionine decarboxylase proenzyme {ECO:0000256\|PIRNR:PIRNR001355}
TAIR10	AT5G18930.1	9E-109	Adenosylmethionine decarboxylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66514857	66515873	+
GWHAAZE00000006	mRNA	66514857	66515873	+
GWHAAZE00000006	exon	66514857	66515873	+
GWHAAZE00000006	CDS	66514857	66515873	+

Transcript Sequence
>GWHTAAZE022103 ATGGCTATGTCCGGTTTTGAAGGCTATGAGAAGCGCCTCGAGCTCCACTTCTCCGGCGATGATCAGGTTACCGGAGCCGGTCTCCGGCAGCTAGACATCAATTCCCTAGAGAAAATTCTCCATGAGGTGCAGTGCACCATAGTATCAGCCCTTGGCAACAATTACGTGGACTCTTACGTACTATCAGAATCAAGCCTTTTTGTGTACCCCACCAAGATCATCATCAAAACATGTGGCACCACCCGCTTATTGAAATCCGTCCGTCCATTTCTAACCTACGCATCTCAGATCGGCTTGACTGTCACCAGGTGCACCTACACCCGGGGTAGCTTTATCTTTCCCCAATCACAGCCCCACCCTCACACGTGCTTCGACGATGAGGTCACGTGCCTGTTGCAAAATTTGCCTTCCCATCTTTGCTGTAAAAAAGCTTCGGTTATGCCGTCGAATTTAACCTCTCACTCATGGCACGTGTTCTCCGCCAGTCACGCGCCGAGTCACGTTCCGGAACACGTGCCGTTCACCATTGAAGTGTGTATGACGGAGCTCGATCGGGGACTTGCTCGGAAGTTTTTCCGCCAACCGGAGGACGGGAAAAACGGGGACACCGCCGGTGAAGAGATGACGGAGATTACCGGAATTAGAGATCTCAATCCTAATGCTGTGATTTGTGATTTTGGATTCGATCCGTGCGGTTACTCGATGAACGGAATTGATGGAGATCGGTACTCGACGATCCACGTCACTCCCGAGGACGGATTTAGTTACGCGAGTTTTGAGTCGATTTACGATGACTGTGATAAGGTTGCGGCAGTTCTGGAGAAATTGGTGAGGATTTTCCGGCCGTCGACAATGTCGGTGGCGATTACGTTTATTAGCAGCGTCAGCGATGAAGCGTGGAGGAGTGTGGCCGGTGTGGTGGAGTCGGTTGGGATGAAATGCCGGAGTTGTATGGCGGATGAATTTCCGGGTGGAGGGAGTGTGGTGTTTCAAACGTTCAAGACACGCCGGAAATAG

Network for GWHGAAZE022075

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01536.17	SAM_decarbox	5	334	4.20E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01611	speD, AMD1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006597	biological_process	spermine biosynthetic process
GO:0008295	biological_process	spermidine biosynthetic process
GO:0004014	molecular_function	adenosylmethionine decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.186
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.426
	SRR3591709	Stem	0.326
	SRR3591710	White floral bud	0.651
	SRR3591711	White flower	0.226
	SRR3591712	Green floral bud	1.124
	SRR3591713	Yellow flower	0.589
SRP173429	SRR8316895	Juvenile bud stage	0.565
	SRR8316896	Juvenile bud stage	0.694
	SRR8316897	Juvenile bud stage	0.341
	SRR8316894	Third green stage	0.292
	SRR8316900	Third green stage	0.795
	SRR8316901	Third green stage	0.983
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.344
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.144
	SRR8316904	Silver flowering stage	0.054
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.313
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.182
SRP132670	SRR6706286	Control	0.983
	SRR6706287	Light intensity 50%	1.011
	SRR6706288	Light intensity 20%	0.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.514
	CNS0095593	Slightly white alabastrum(diploid) 2	1.350
	CNS0095594	Slightly white alabastrum(diploid) 3	0.612
	CNS0095595	Whole white alabastrum(diploid) 2	0.194
	CNS0095596	Whole white alabastrum(diploid) 3	0.324
	CNS0095597	Whole white alabastrum(diploid) 4	0.152
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.317
	CNS0095600	Silvery flower (diploied) 3	0.154
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.290
	CNS0095603	Golden flower (diploid) 3	0.203
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.496
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.477
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.669
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.492
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.088
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.364
	CNS0095610	Silvery flower (tetraploid) 1	0.099
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.035
	CNS0095613	Golden flower (tetraploid) 1	0.125
	CNS0095614	Golden flower (tetraploid) 2	0.223
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.827
	CRR073298	Stem 2	2.285
	CRR073299	Stem 3	9.706
	CRR073300	Leaf 1	0.906
	CRR073301	Leaf 2	1.229
	CRR073302	Leaf 3	1.409
	CRR073303	Juvenile bud 1	0.182
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.712
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.050
	CRR073309	Second white 1	0.113
	CRR073310	Second white 2	0.151
	CRR073311	Second white 3	0.105
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.067