Gene detail

Detail information of GWHGAAZE022081

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002516833.1	1.8015E-175	prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
COG	YP_005436156.1	1E-46	putative prolyl 4-hydroxylase alpha subunit
Swissprot	tr\|Q8LAN3\|P4H4_ARATH	5E-165	Probable prolyl 4-hydroxylase 4 (Precursor)
trEMBL	tr\|B9RSW4\|B9RSW4_RICCO	7E-176	Prolyl 4-hydroxylase alpha subunit, putative {ECO:0000313\|EMBL:EEF45447.1}
TAIR10	AT5G18900.1	3E-127	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66591807	66596599	+
GWHAAZE00000006	mRNA	66591807	66596599	+
GWHAAZE00000006	exon	66591807	66592003	+
GWHAAZE00000006	exon	66592093	66592150	+
GWHAAZE00000006	exon	66592287	66592391	+
GWHAAZE00000006	exon	66593516	66593573	+
GWHAAZE00000006	exon	66594581	66594756	+
GWHAAZE00000006	exon	66596145	66596214	+
GWHAAZE00000006	exon	66596304	66596599	+
GWHAAZE00000006	CDS	66591807	66592003	+
GWHAAZE00000006	CDS	66592093	66592150	+
GWHAAZE00000006	CDS	66592287	66592391	+
GWHAAZE00000006	CDS	66593516	66593573	+
GWHAAZE00000006	CDS	66594581	66594756	+
GWHAAZE00000006	CDS	66596145	66596214	+
GWHAAZE00000006	CDS	66596304	66596599	+

Transcript Sequence
>GWHTAAZE022109 AAAACGCAAAAATTAATATTCCCGGGATTTGGTTTCTTCTTCGACTTGACAAACGAAACAATCCAACTTGAGCTGATGACTAGGTTTTCCCAGCATTCACTGATTTTCTTGCTTTCGATCGTTTCATTCGTCTATAAATCTTCGAGTTCTTCCATAATCAATCCCTCTAAAGTCAAGCAAGTCTCATCGAAACCGAGGGCTTTTGTATACGAAGGTTTTCTTACAGACGAAGAATGCGATCATTTGGTTTCACTTGCCAAATCGGAGCTGAAAAGATCGTCTGTTGCTGATAATGTTTCTGGAAAGAGCAAGCTCAGCGATGTGAGAACTAGCTCTGGAATGTTTATCTCCAAGGCCAAGGATCCTATTGTTGCTGGTATAGAAGACAAAATTGCAGCTTGGACCTTCCTACCCAAAGAAAACGGGGAAGACATACAAGTGCTAAGATATGAGCACGGGCAGAAATATGATCCACACTATGATTACTTCTCTGACCGGGATAATATTGCACAAGGTGGACACCGCATAGCTACTGTCCTTATGTATCTCACTAATGTTGTCAAAGGTGGTGAGACTGTATTCCCCCAGGCGGAGGATCCTCCCCGCCATAAATCATCTTCATCTAATGAAAATTTATCAGAGTGCGCAAAGAAAGGCATTGCAGTAAAACCGCGAAAAGGGGATGCGCTTCTTTTCTTCAGTCTCCACCCCAGTGCTATACCTGACCCAAACAGCCTCCATGGAGGGTGCCCAGTGATAGAAGGTGAGAAATGGTCTGCAACAAAGTGGGTCCACGTGGATTCCTTCGACAAGATTGTGGGGCCCGGTGGGAATTGCACAGATAAGAACGATAATTGCGAGAGGTGGGCCGCCCTTGGAGAGTGCACCAAGAATTCAGAGTACATGGTGGGGACAACGGAGCTTCCGGGGTACTGTAGGAGAAGCTGTAAGTTGTGTTAG

Network for GWHGAAZE022081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	145	265	2.50E-21
PF01549.25	ShK	278	319	0.0001

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.013
	SRR3591706	second leaf	28.306
	SRR3591707	mature leaf	37.700
	SRR3591708	Shoot apex	20.169
	SRR3591709	Stem	41.428
	SRR3591710	White floral bud	26.428
	SRR3591711	White flower	30.101
	SRR3591712	Green floral bud	25.210
	SRR3591713	Yellow flower	24.976
SRP173429	SRR8316895	Juvenile bud stage	18.350
	SRR8316896	Juvenile bud stage	24.970
	SRR8316897	Juvenile bud stage	12.915
	SRR8316894	Third green stage	13.107
	SRR8316900	Third green stage	46.025
	SRR8316901	Third green stage	40.934
	SRR8316898	Complete white stage	28.101
	SRR8316899	Complete white stage	57.929
	SRR8316903	Complete white stage	34.054
	SRR8316902	Silver flowering stage	24.152
	SRR8316904	Silver flowering stage	31.117
	SRR8316905	Silver flowering stage	15.824
	SRR8316906	Gold flowering stage	41.227
	SRR8316907	Gold flowering stage	44.900
	SRR8316908	Gold flowering stage	45.411
SRP132670	SRR6706286	Control	34.946
	SRR6706287	Light intensity 50%	33.827
	SRR6706288	Light intensity 20%	36.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.102
	CNS0095593	Slightly white alabastrum(diploid) 2	39.686
	CNS0095594	Slightly white alabastrum(diploid) 3	28.460
	CNS0095595	Whole white alabastrum(diploid) 2	30.374
	CNS0095596	Whole white alabastrum(diploid) 3	32.824
	CNS0095597	Whole white alabastrum(diploid) 4	29.326
	CNS0095598	Silvery flower (diploied) 1	27.660
	CNS0095599	Silvery flower (diploied) 2	32.010
	CNS0095600	Silvery flower (diploied) 3	41.179
	CNS0095601	Golden flower (diploid) 1	23.674
	CNS0095602	Golden flower (diploid) 2	30.887
	CNS0095603	Golden flower (diploid) 3	28.952
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.852
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.179
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.936
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.671
	CNS0095610	Silvery flower (tetraploid) 1	47.398
	CNS0095611	Silvery flower (tetraploid) 2	40.310
	CNS0095612	Silvery flower (tetraploid) 3	34.220
	CNS0095613	Golden flower (tetraploid) 1	25.908
	CNS0095614	Golden flower (tetraploid) 2	35.344
	CNS0095615	Golden flower (tetraploid) 3	21.281
CRA001975	CRR073297	Stem 1	26.209
	CRR073298	Stem 2	26.477
	CRR073299	Stem 3	32.261
	CRR073300	Leaf 1	40.132
	CRR073301	Leaf 2	43.801
	CRR073302	Leaf 3	51.419
	CRR073303	Juvenile bud 1	49.785
	CRR073304	Juvenile bud 2	44.167
	CRR073305	Juvenile bud 3	50.773
	CRR073306	Third green 1	39.177
	CRR073307	Third green 2	34.564
	CRR073308	Third green 3	32.710
	CRR073309	Second white 1	29.170
	CRR073310	Second white 2	19.512
	CRR073311	Second white 3	15.039
	CRR073312	Silver flowering 1	15.236
	CRR073313	Silver flowering 2	14.287
	CRR073314	Silver flowering 3	12.342
	CRR073315	Gold flowering 1	14.476
	CRR073316	Gold flowering 2	10.784
	CRR073317	Gold flowering 3	13.247
	CRR073318	Tawny withering 1	32.033
	CRR073319	Tawny withering 2	34.186
	CRR073320	Tawny withering 3	24.138