Gene detail

Detail information of GWHGAAZE022085

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26137.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8S9G8\|SPL7_ARATH	3E-162	Squamosa promoter-binding-like protein 7
trEMBL	tr\|A0A068TSI2\|A0A068TSI2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98939.1}
TAIR10	AT5G18830.1	7E-129	squamosa promoter binding protein-like 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66658199	66666401	-
GWHAAZE00000006	mRNA	66658199	66666401	-
GWHAAZE00000006	exon	66665839	66666401	-
GWHAAZE00000006	exon	66665202	66665226	-
GWHAAZE00000006	exon	66664430	66664684	-
GWHAAZE00000006	exon	66664250	66664266	-
GWHAAZE00000006	exon	66663600	66663772	-
GWHAAZE00000006	exon	66663270	66663487	-
GWHAAZE00000006	exon	66663093	66663167	-
GWHAAZE00000006	exon	66662881	66662988	-
GWHAAZE00000006	exon	66662574	66662691	-
GWHAAZE00000006	exon	66661267	66661402	-
GWHAAZE00000006	exon	66659928	66660090	-
GWHAAZE00000006	exon	66659257	66659811	-
GWHAAZE00000006	exon	66658199	66658489	-
GWHAAZE00000006	CDS	66665839	66666401	-
GWHAAZE00000006	CDS	66665202	66665226	-
GWHAAZE00000006	CDS	66664430	66664684	-
GWHAAZE00000006	CDS	66664250	66664266	-
GWHAAZE00000006	CDS	66663600	66663772	-
GWHAAZE00000006	CDS	66663270	66663487	-
GWHAAZE00000006	CDS	66663093	66663167	-
GWHAAZE00000006	CDS	66662881	66662988	-
GWHAAZE00000006	CDS	66662574	66662691	-
GWHAAZE00000006	CDS	66661267	66661402	-
GWHAAZE00000006	CDS	66659928	66660090	-
GWHAAZE00000006	CDS	66659257	66659811	-
GWHAAZE00000006	CDS	66658199	66658489	-

Transcript Sequence
>GWHTAAZE022113 ATGCACAATCCCCCTTCACCGCCACTTCCACCCGACCATCATCGTCCTACTCTTCCCCAAATGGACCCAAACTCCTCCCCCTCCCCTTCCCTCTGGGACTGGTCCGAGATCCTCGATTTCGCCCTCGAAGATCAACAACTCTCTCTCCCTTTCGACTTACCCCAATTTCCACCTAATTTCTCCCCAACCCAACTCCCTCCGCCCGACTCACCCGACAATTCTGACAGGCTCGGTGCCGATCCACCGGCCAAGTCCGAAAGGATAAGGAAGCGGGACCCCAGGCTGACTTGTTCCAATTTCCTCGCCGGTCGGATCCCCTGTGCCTGTCCGGAGCTTGATGCCAAGCTACAGGAGGAGGAGGAGGCTGCTGGCGCCGGGAAGAAGCGGGCCCGGACTGCGAGGGCGGGGCCCGGGACGGCGAGGTGTCAGGTACCTCAGTGCGGGACCGATATAAGTGAGCTGAAAGGGTATCATAGAAGGCATAGGGTTTGTCTTGGCTGTGCTAATGCTAGGGAGGTGGTTCTCGATGGGGAGAACAAGAGATACTGTCAGCAGTGTGGCAACATGGAGATCTGGATTGAATTCAAGGGGATCATTGATGACACTTCGCTTCTAGAGTTTCCACTTGGAAAGCCTTTCCATGTGGACGGTGTTTACCTGCTTGGTTGTGCAGTTCACTTCCAAGTTGGAGGCTCGAGTGTGGGGACTGCTATACCTTCTTATTGCCTAGGTTCGAGGCATTCGCGCCTCATACACTTCGTAGCTGAATATGCTATTGATGCGTGCTGTCGTGTTGTGTGCTTGCGCAGAGTAGCTTTAGTGTTACGTGTAGCCAAGTTGTGGGGTCTTCTCCAAGACCGGTTTCACATCTTGTTGGATTTTGATGAAGGCAAACGTAGTTGTAGAAGAAAATTGCAGCGCCACAATAACAGACGTCGAAGAAAGCCGTCTGATTCCAAGGATGCTGTTGAAAAGGAACCTCAACAGGAACTATTGGCTGAAGACACAGTCTGTGGTGATGACATTGGAATAGATGGTAAAAGCTTGAGCAGCCAAGGAGCACAAGGGGGAACATGGTTAGATACAGAAGAACAAACTCCTATACTACCCTCTGCTCACGTTTCCCAGAATATCCAGTGTGACAGTGGTGTATCTCTTGCAGCTTCTGATGAAACCCTAAATGATGAAGAAAGAGAAACATATACTCGTTCTCCATCCTATAATGACAACAAAAATTCTTTGTTCTCCGTGTGCCCAACTGGTCGGATCTCATTCAAGCTCTATGACTGGAACCCTGCCGAGTTCCCTCGACGTCTTAGGCACCAGATATTTCAGTGGTTGGCTAGCATGCCAGTTGAGTTAGAGGGTTATATCCGTCCTGGGTGTACAATTTTGACCATGTTCATTGCAATGCCAAAGTTTATGTGGGTTAAGTTATTAGAAGACCCTGTTGCACACATACACGATCTTATGGTTGCACCTGGAAACATGCTGTCTGGAAGAGGCACCTTTTTTGTTTACCTAAACAACATGATTTACCGTGTAATGAAAGATGGAACTTCCGTGATGAAAGTTGATGTGGAGAGAGAAGCCCCAAAACTTCACTATGTTTATCCTACCTGCTTTGAGGCCGGCAAACCCATGGAGTTTGTTGCCTGCGGAAGCAACCTACTTCAACCCAAACTTCGGTTTCTTGTATCTTTTGCTGGAAAGTATCTGAGATATGTTGTTTGTGTTCCATCTCCATGTAGCAAGACTGAAAAAGATGCTGCTAGTAGTTTTAACCATCAGTTAGTCAAGATATATGTCCCTCATACTGAACCGGATGTTTTTGGTCCTGCATTCATCGAGGTTGAGAACGATTATGGCTTATCGAACTTCATTCCCATTCTCATCGGGGACAAGGAAATTTGTTCTGAAATTAAGATAATGCAGCACAAATTCGATAAATATCAAGTTTCAAAAGAATCAAAGGTTGCAGCTACTAGTTCATCATTCGAACTTTTTGTATTGAGACAAAAGTATTTATCCGAATTAATTTTAGACGTGGCATGGTTATTCAAGGAGCCTGCACCAGTAAATATGCAAAACATTCCGGTTTCTTTTCAAATACAAAGATTCAATTATATATTGGAAGTTCTTATAGAAAATGAATCTACCGCAATGTTGCAGAGAGCGTTGAAATATATGAAAATTGTAATGGATAACTGCCTGACTACTGGTATTGCTGATGCTGATATGAGGGTTTATCAGAGGAATATTAATCAGGTTACGGATATCCTTGGTCAAAAGTTGCCACAAAAGGTGGATTCAACATTGTTTGTTAGAAATCTAATACCAGAAGAGAATGATTTTGATCAAAGCTTTGAAAATGACGAGCACCCTCTTGTTTCAGTTTCCAATCAGGATTTGGAGGCAAGCAAGTTTGACGCCTCAGAGGGTTCTACTTCCCGAGAAAGAAGTACGACTGTTCCACTCTTAAATAGAGAGGTTTTTATGAGCATTAAGGAAGGGCAACAGCCAAAGAAACCCCACAGTCGTGTATTATTTACGAAATCTGTTTTCACCTCTCGCCCTCTTATCTTTGTTATTGCTACTGCCACCGTTTGTTTTGGAATTTGTGCCGCCGTTCTCCATCCAGATAATGTTGGCAAATTTGCAACAACTATTCGCAGATGTATGTTTGACAACACTTAG

Network for GWHGAAZE022085

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	142	196	5.60E-15
PF03110.15	SBP	287	315	1.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.600
	SRR3591706	second leaf	14.078
	SRR3591707	mature leaf	22.988
	SRR3591708	Shoot apex	15.969
	SRR3591709	Stem	39.268
	SRR3591710	White floral bud	16.965
	SRR3591711	White flower	26.750
	SRR3591712	Green floral bud	13.547
	SRR3591713	Yellow flower	31.966
SRP173429	SRR8316895	Juvenile bud stage	13.348
	SRR8316896	Juvenile bud stage	14.002
	SRR8316897	Juvenile bud stage	6.293
	SRR8316894	Third green stage	4.879
	SRR8316900	Third green stage	12.873
	SRR8316901	Third green stage	12.023
	SRR8316898	Complete white stage	6.456
	SRR8316899	Complete white stage	17.031
	SRR8316903	Complete white stage	12.779
	SRR8316902	Silver flowering stage	5.436
	SRR8316904	Silver flowering stage	8.755
	SRR8316905	Silver flowering stage	4.115
	SRR8316906	Gold flowering stage	14.795
	SRR8316907	Gold flowering stage	14.108
	SRR8316908	Gold flowering stage	16.719
SRP132670	SRR6706286	Control	16.536
	SRR6706287	Light intensity 50%	14.781
	SRR6706288	Light intensity 20%	11.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.493
	CNS0095593	Slightly white alabastrum(diploid) 2	7.150
	CNS0095594	Slightly white alabastrum(diploid) 3	7.281
	CNS0095595	Whole white alabastrum(diploid) 2	5.387
	CNS0095596	Whole white alabastrum(diploid) 3	4.504
	CNS0095597	Whole white alabastrum(diploid) 4	4.571
	CNS0095598	Silvery flower (diploied) 1	11.289
	CNS0095599	Silvery flower (diploied) 2	9.500
	CNS0095600	Silvery flower (diploied) 3	18.452
	CNS0095601	Golden flower (diploid) 1	8.497
	CNS0095602	Golden flower (diploid) 2	23.375
	CNS0095603	Golden flower (diploid) 3	22.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.662
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.650
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.400
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.791
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.550
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.840
	CNS0095610	Silvery flower (tetraploid) 1	17.988
	CNS0095611	Silvery flower (tetraploid) 2	18.377
	CNS0095612	Silvery flower (tetraploid) 3	15.188
	CNS0095613	Golden flower (tetraploid) 1	16.835
	CNS0095614	Golden flower (tetraploid) 2	21.629
	CNS0095615	Golden flower (tetraploid) 3	20.949
CRA001975	CRR073297	Stem 1	16.281
	CRR073298	Stem 2	12.438
	CRR073299	Stem 3	10.523
	CRR073300	Leaf 1	10.455
	CRR073301	Leaf 2	10.064
	CRR073302	Leaf 3	7.102
	CRR073303	Juvenile bud 1	5.998
	CRR073304	Juvenile bud 2	4.258
	CRR073305	Juvenile bud 3	10.449
	CRR073306	Third green 1	6.867
	CRR073307	Third green 2	2.617
	CRR073308	Third green 3	6.158
	CRR073309	Second white 1	5.118
	CRR073310	Second white 2	7.246
	CRR073311	Second white 3	7.423
	CRR073312	Silver flowering 1	7.278
	CRR073313	Silver flowering 2	5.669
	CRR073314	Silver flowering 3	6.660
	CRR073315	Gold flowering 1	9.795
	CRR073316	Gold flowering 2	19.579
	CRR073317	Gold flowering 3	10.846
	CRR073318	Tawny withering 1	12.844
	CRR073319	Tawny withering 2	9.730
	CRR073320	Tawny withering 3	14.281