Detail information of GWHGAAZE022086


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274506.11.1149E-44PREDICTED: F-box protein CPR30-like [Nelumbo nucifera]
Swissprottr|Q8GXC7|FBK50_ARATH5E-31F-box/kelch-repeat protein At3g06240
trEMBLtr|B9N0T6|B9N0T6_POPTR2E-43Uncharacterized protein {ECO:0000313|EMBL:ERP50882.1}
TAIR10AT3G06240.18E-25F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6668030066681439-
GWHAAZE00000006mRNA6668030066681439-
GWHAAZE00000006exon6668030066681439-
GWHAAZE00000006CDS6668030066681439-
Transcript Sequence

Network for GWHGAAZE022086

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box3441.20E-09
PF07734.14FBA_12143415.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.709
SRR3591706second leaf1.228
SRR3591707mature leaf1.896
SRR3591708Shoot apex3.155
SRR3591709Stem2.187
SRR3591710White floral bud1.276
SRR3591711White flower1.094
SRR3591712Green floral bud3.684
SRR3591713Yellow flower0.296
SRP173429 SRR8316895Juvenile bud stage 1.629
SRR8316896Juvenile bud stage 3.046
SRR8316897Juvenile bud stage 2.257
SRR8316894Third green stage 0.662
SRR8316900Third green stage 2.342
SRR8316901Third green stage 1.922
SRR8316898Complete white stage 1.315
SRR8316899Complete white stage 2.985
SRR8316903Complete white stage 1.465
SRR8316902Silver flowering stage0.856
SRR8316904Silver flowering stage1.705
SRR8316905Silver flowering stage0.617
SRR8316906Gold flowering stage 1.564
SRR8316907Gold flowering stage 1.530
SRR8316908Gold flowering stage 2.804
SRP132670SRR6706286Control0.919
SRR6706287Light intensity 50%0.839
SRR6706288Light intensity 20%0.685
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.152
CNS0095593Slightly white alabastrum(diploid) 22.360
CNS0095594Slightly white alabastrum(diploid) 32.121
CNS0095595Whole white alabastrum(diploid) 21.660
CNS0095596Whole white alabastrum(diploid) 31.262
CNS0095597Whole white alabastrum(diploid) 41.652
CNS0095598Silvery flower (diploied) 11.514
CNS0095599Silvery flower (diploied) 21.973
CNS0095600Silvery flower (diploied) 32.783
CNS0095601Golden flower (diploid) 11.688
CNS0095602Golden flower (diploid) 22.693
CNS0095603Golden flower (diploid) 32.396
CNS0095604Slightly white alabastrum(tetraploid) 12.744
CNS0095605Slightly white alabastrum(tetraploid) 22.444
CNS0095606Slightly white alabastrum(tetraploid) 34.798
CNS0095607Whole white alabastrum(tetraploid) 11.925
CNS0095608Whole white alabastrum(tetraploid) 21.430
CNS0095609Whole white alabastrum(tetraploid) 31.278
CNS0095610Silvery flower (tetraploid) 13.048
CNS0095611Silvery flower (tetraploid) 23.148
CNS0095612Silvery flower (tetraploid) 32.776
CNS0095613Golden flower (tetraploid) 11.672
CNS0095614Golden flower (tetraploid) 22.322
CNS0095615Golden flower (tetraploid) 31.996
CRA001975CRR073297Stem 11.667
CRR073298Stem 21.371
CRR073299Stem 30.793
CRR073300Leaf 10.603
CRR073301Leaf 21.120
CRR073302Leaf 30.312
CRR073303Juvenile bud 10.448
CRR073304Juvenile bud 20.434
CRR073305Juvenile bud 30.530
CRR073306Third green 10.313
CRR073307Third green 20.047
CRR073308Third green 30.121
CRR073309Second white 10.068
CRR073310Second white 20.429
CRR073311Second white 30.094
CRR073312Silver flowering 10.343
CRR073313Silver flowering 20.076
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.625
CRR073316Gold flowering 20.424
CRR073317Gold flowering 30.228
CRR073318Tawny withering 10.772
CRR073319Tawny withering 20.501
CRR073320Tawny withering 30.752