Detail information of GWHGAAZE022087


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010026698.13.06334E-30PREDICTED: F-box/kelch-repeat protein At3g06240-like [Eucalyptus grandis]
Swissprottr|Q8GXC7|FBK50_ARATH7E-17F-box/kelch-repeat protein At3g06240
trEMBLtr|A0A059B2V4|A0A059B2V4_EUCGR1E-30Uncharacterized protein {ECO:0000313|EMBL:KCW59970.1}
TAIR10AT3G06240.18E-16F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6668798366689612-
GWHAAZE00000006mRNA6668798366689612-
GWHAAZE00000006exon6668798366688686-
GWHAAZE00000006exon6668922866689612-
GWHAAZE00000006CDS6668922866689612-
GWHAAZE00000006CDS6668798366688686-
Transcript Sequence

Network for GWHGAAZE022087

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box2444.50E-10
PF07734.14FBA_12003182.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.512
SRR3591706second leaf0.980
SRR3591707mature leaf0.662
SRR3591708Shoot apex2.910
SRR3591709Stem1.760
SRR3591710White floral bud1.508
SRR3591711White flower1.015
SRR3591712Green floral bud2.173
SRR3591713Yellow flower0.842
SRP173429 SRR8316895Juvenile bud stage 1.716
SRR8316896Juvenile bud stage 2.705
SRR8316897Juvenile bud stage 1.041
SRR8316894Third green stage 1.210
SRR8316900Third green stage 5.336
SRR8316901Third green stage 4.591
SRR8316898Complete white stage 0.654
SRR8316899Complete white stage 3.021
SRR8316903Complete white stage 1.285
SRR8316902Silver flowering stage0.486
SRR8316904Silver flowering stage1.015
SRR8316905Silver flowering stage0.355
SRR8316906Gold flowering stage 0.528
SRR8316907Gold flowering stage 0.700
SRR8316908Gold flowering stage 1.111
SRP132670SRR6706286Control1.927
SRR6706287Light intensity 50%2.134
SRR6706288Light intensity 20%2.089
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.882
CNS0095593Slightly white alabastrum(diploid) 23.012
CNS0095594Slightly white alabastrum(diploid) 33.817
CNS0095595Whole white alabastrum(diploid) 24.553
CNS0095596Whole white alabastrum(diploid) 33.858
CNS0095597Whole white alabastrum(diploid) 43.614
CNS0095598Silvery flower (diploied) 10.842
CNS0095599Silvery flower (diploied) 21.826
CNS0095600Silvery flower (diploied) 33.026
CNS0095601Golden flower (diploid) 11.925
CNS0095602Golden flower (diploid) 22.831
CNS0095603Golden flower (diploid) 31.350
CNS0095604Slightly white alabastrum(tetraploid) 15.007
CNS0095605Slightly white alabastrum(tetraploid) 24.419
CNS0095606Slightly white alabastrum(tetraploid) 33.072
CNS0095607Whole white alabastrum(tetraploid) 15.254
CNS0095608Whole white alabastrum(tetraploid) 23.496
CNS0095609Whole white alabastrum(tetraploid) 34.295
CNS0095610Silvery flower (tetraploid) 12.646
CNS0095611Silvery flower (tetraploid) 22.520
CNS0095612Silvery flower (tetraploid) 31.364
CNS0095613Golden flower (tetraploid) 11.249
CNS0095614Golden flower (tetraploid) 21.703
CNS0095615Golden flower (tetraploid) 30.744
CRA001975CRR073297Stem 11.879
CRR073298Stem 21.672
CRR073299Stem 30.396
CRR073300Leaf 12.581
CRR073301Leaf 21.565
CRR073302Leaf 30.746
CRR073303Juvenile bud 13.074
CRR073304Juvenile bud 20.847
CRR073305Juvenile bud 31.525
CRR073306Third green 10.291
CRR073307Third green 20.527
CRR073308Third green 30.392
CRR073309Second white 10.182
CRR073310Second white 20.116
CRR073311Second white 30.547
CRR073312Silver flowering 10.170
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.285
CRR073315Gold flowering 10.636
CRR073316Gold flowering 20.830
CRR073317Gold flowering 30.039
CRR073318Tawny withering 11.592
CRR073319Tawny withering 20.585
CRR073320Tawny withering 31.833