Detail information of GWHGAAZE022088


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274506.16.04744E-46PREDICTED: F-box protein CPR30-like [Nelumbo nucifera]
Swissprottr|Q8GXC7|FBK50_ARATH5E-31F-box/kelch-repeat protein At3g06240
trEMBLtr|I1MFB7|I1MFB7_SOYBN2E-44Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G10840.1}
TAIR10AT3G06240.11E-27F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6670883666710011-
GWHAAZE00000006mRNA6670883666710011-
GWHAAZE00000006exon6670883666710011-
GWHAAZE00000006CDS6670883666710011-
Transcript Sequence

Network for GWHGAAZE022088

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box2445.60E-10
PF07734.14FBA_12213502.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.732
SRR3591706second leaf0.546
SRR3591707mature leaf0.398
SRR3591708Shoot apex1.567
SRR3591709Stem0.368
SRR3591710White floral bud2.896
SRR3591711White flower0.785
SRR3591712Green floral bud4.446
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.463
SRR8316896Juvenile bud stage 2.706
SRR8316897Juvenile bud stage 0.952
SRR8316894Third green stage 1.383
SRR8316900Third green stage 4.379
SRR8316901Third green stage 3.750
SRR8316898Complete white stage 0.436
SRR8316899Complete white stage 1.930
SRR8316903Complete white stage 0.414
SRR8316902Silver flowering stage0.220
SRR8316904Silver flowering stage0.520
SRR8316905Silver flowering stage0.322
SRR8316906Gold flowering stage 0.495
SRR8316907Gold flowering stage 0.605
SRR8316908Gold flowering stage 0.462
SRP132670SRR6706286Control1.356
SRR6706287Light intensity 50%1.577
SRR6706288Light intensity 20%1.627
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.633
CNS0095593Slightly white alabastrum(diploid) 23.704
CNS0095594Slightly white alabastrum(diploid) 34.139
CNS0095595Whole white alabastrum(diploid) 26.456
CNS0095596Whole white alabastrum(diploid) 36.505
CNS0095597Whole white alabastrum(diploid) 46.004
CNS0095598Silvery flower (diploied) 10.464
CNS0095599Silvery flower (diploied) 21.018
CNS0095600Silvery flower (diploied) 31.056
CNS0095601Golden flower (diploid) 11.196
CNS0095602Golden flower (diploid) 20.872
CNS0095603Golden flower (diploid) 31.084
CNS0095604Slightly white alabastrum(tetraploid) 13.385
CNS0095605Slightly white alabastrum(tetraploid) 24.878
CNS0095606Slightly white alabastrum(tetraploid) 32.110
CNS0095607Whole white alabastrum(tetraploid) 16.629
CNS0095608Whole white alabastrum(tetraploid) 26.797
CNS0095609Whole white alabastrum(tetraploid) 33.429
CNS0095610Silvery flower (tetraploid) 11.036
CNS0095611Silvery flower (tetraploid) 21.361
CNS0095612Silvery flower (tetraploid) 30.868
CNS0095613Golden flower (tetraploid) 10.142
CNS0095614Golden flower (tetraploid) 20.427
CNS0095615Golden flower (tetraploid) 30.293
CRA001975CRR073297Stem 11.408
CRR073298Stem 20.995
CRR073299Stem 31.461
CRR073300Leaf 10.939
CRR073301Leaf 21.426
CRR073302Leaf 30.659
CRR073303Juvenile bud 11.504
CRR073304Juvenile bud 20.663
CRR073305Juvenile bud 30.306
CRR073306Third green 10.159
CRR073307Third green 20.145
CRR073308Third green 30.100
CRR073309Second white 10.000
CRR073310Second white 20.057
CRR073311Second white 30.000
CRR073312Silver flowering 10.121
CRR073313Silver flowering 20.032
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.104
CRR073316Gold flowering 20.133
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.439
CRR073319Tawny withering 20.267
CRR073320Tawny withering 30.533