Detail information of GWHGAAZE022096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277395.20PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X1 [Vitis vinifera]
COGYP_003372532.13E-65shikimate 5-dehydrogenase
Swissprottr|Q9SQT8|DHQSD_ARATH0Shikimate dehydrogenase (Precursor)
trEMBLtr|A0A059A8Y1|A0A059A8Y1_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW50547.1}
TAIR10AT3G06350.19E-151dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6680917466813041-
GWHAAZE00000006mRNA6680917466813041-
GWHAAZE00000006exon6680917466809322-
GWHAAZE00000006exon6680940466809512-
GWHAAZE00000006exon6680960266809665-
GWHAAZE00000006exon6681010566810451-
GWHAAZE00000006exon6681100466811231-
GWHAAZE00000006exon6681160366811708-
GWHAAZE00000006exon6681243566812676-
GWHAAZE00000006exon6681292066813041-
GWHAAZE00000006five_prime_UTR6681292966813041-
GWHAAZE00000006CDS6681292066812928-
GWHAAZE00000006CDS6681243566812676-
GWHAAZE00000006CDS6681160366811708-
GWHAAZE00000006CDS6681100466811231-
GWHAAZE00000006CDS6681010566810451-
GWHAAZE00000006CDS6680960266809665-
GWHAAZE00000006CDS6680940466809512-
GWHAAZE00000006CDS6680917466809322-
Transcript Sequence

Network for GWHGAAZE022096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01487.16DHquinase_I262468.20E-71
PF08501.12Shikimate_dh_N2603402.00E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13832aroDE, DHQ-SDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0003855molecular_function3-dehydroquinate dehydratase activity
GO:0003824molecular_functioncatalytic activity
GO:0004764molecular_functionshikimate 3-dehydrogenase (NADP+) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.741
SRR3591706second leaf17.143
SRR3591707mature leaf6.525
SRR3591708Shoot apex14.427
SRR3591709Stem13.182
SRR3591710White floral bud5.846
SRR3591711White flower15.167
SRR3591712Green floral bud2.691
SRR3591713Yellow flower31.494
SRP173429 SRR8316895Juvenile bud stage 17.443
SRR8316896Juvenile bud stage 31.206
SRR8316897Juvenile bud stage 25.093
SRR8316894Third green stage 6.491
SRR8316900Third green stage 7.789
SRR8316901Third green stage 9.221
SRR8316898Complete white stage 1.731
SRR8316899Complete white stage 3.395
SRR8316903Complete white stage 2.932
SRR8316902Silver flowering stage10.567
SRR8316904Silver flowering stage13.330
SRR8316905Silver flowering stage5.236
SRR8316906Gold flowering stage 45.310
SRR8316907Gold flowering stage 42.292
SRR8316908Gold flowering stage 51.998
SRP132670SRR6706286Control8.661
SRR6706287Light intensity 50%7.338
SRR6706288Light intensity 20%7.398
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.767
CNS0095593Slightly white alabastrum(diploid) 212.217
CNS0095594Slightly white alabastrum(diploid) 316.432
CNS0095595Whole white alabastrum(diploid) 210.962
CNS0095596Whole white alabastrum(diploid) 35.505
CNS0095597Whole white alabastrum(diploid) 46.213
CNS0095598Silvery flower (diploied) 118.016
CNS0095599Silvery flower (diploied) 222.456
CNS0095600Silvery flower (diploied) 37.808
CNS0095601Golden flower (diploid) 117.895
CNS0095602Golden flower (diploid) 212.860
CNS0095603Golden flower (diploid) 312.153
CNS0095604Slightly white alabastrum(tetraploid) 15.869
CNS0095605Slightly white alabastrum(tetraploid) 24.834
CNS0095606Slightly white alabastrum(tetraploid) 35.523
CNS0095607Whole white alabastrum(tetraploid) 11.733
CNS0095608Whole white alabastrum(tetraploid) 21.097
CNS0095609Whole white alabastrum(tetraploid) 37.347
CNS0095610Silvery flower (tetraploid) 12.918
CNS0095611Silvery flower (tetraploid) 21.470
CNS0095612Silvery flower (tetraploid) 37.790
CNS0095613Golden flower (tetraploid) 18.195
CNS0095614Golden flower (tetraploid) 27.825
CNS0095615Golden flower (tetraploid) 317.429
CRA001975CRR073297Stem 120.596
CRR073298Stem 220.691
CRR073299Stem 317.074
CRR073300Leaf 14.948
CRR073301Leaf 28.562
CRR073302Leaf 38.644
CRR073303Juvenile bud 13.315
CRR073304Juvenile bud 22.510
CRR073305Juvenile bud 33.245
CRR073306Third green 112.440
CRR073307Third green 28.524
CRR073308Third green 39.512
CRR073309Second white 142.074
CRR073310Second white 246.838
CRR073311Second white 3101.955
CRR073312Silver flowering 1179.390
CRR073313Silver flowering 2101.809
CRR073314Silver flowering 3107.878
CRR073315Gold flowering 111.405
CRR073316Gold flowering 219.970
CRR073317Gold flowering 35.891
CRR073318Tawny withering 116.495
CRR073319Tawny withering 214.881
CRR073320Tawny withering 311.314