Gene detail

Detail information of GWHGAAZE022098

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KGN57063.1	0	hypothetical protein Csa_3G151400 [Cucumis sativus]
COG	YP_002524068.1	6E-28	serine/threonine-protein kinase PksC
Swissprot	tr\|Q2QAV0\|TIO_ARATH	6E-42	Serine/threonine-protein kinase TIO
trEMBL	tr\|A0A0A0L5R1\|A0A0A0L5R1_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN57063.1}
TAIR10	AT5G18700.1	0	Protein kinase family protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66828937	66836132	+
GWHAAZE00000006	mRNA	66828937	66836132	+
GWHAAZE00000006	exon	66828937	66828984	+
GWHAAZE00000006	exon	66829081	66829170	+
GWHAAZE00000006	exon	66829577	66829660	+
GWHAAZE00000006	exon	66830746	66830798	+
GWHAAZE00000006	exon	66830945	66831020	+
GWHAAZE00000006	exon	66831301	66831362	+
GWHAAZE00000006	exon	66831472	66831550	+
GWHAAZE00000006	exon	66831643	66831702	+
GWHAAZE00000006	exon	66831870	66832686	+
GWHAAZE00000006	exon	66832778	66833478	+
GWHAAZE00000006	exon	66834188	66834487	+
GWHAAZE00000006	exon	66835770	66836132	+
GWHAAZE00000006	CDS	66828937	66828984	+
GWHAAZE00000006	CDS	66829081	66829170	+
GWHAAZE00000006	CDS	66829577	66829660	+
GWHAAZE00000006	CDS	66830746	66830798	+
GWHAAZE00000006	CDS	66830945	66831020	+
GWHAAZE00000006	CDS	66831301	66831362	+
GWHAAZE00000006	CDS	66831472	66831550	+
GWHAAZE00000006	CDS	66831643	66831702	+
GWHAAZE00000006	CDS	66831870	66832686	+
GWHAAZE00000006	CDS	66832778	66833478	+
GWHAAZE00000006	CDS	66834188	66834487	+
GWHAAZE00000006	CDS	66835770	66836132	+

Transcript Sequence
>GWHTAAZE022126 ATGAATCACTACCACATTTACGAAGCAATCGGTCGAGGGAATTACTCGACTGTTTATAAAGGGAGAAAGAAGAAGAGTATTGAATATTTTGCTATTAAGAGCGTTGATAAGTCACACAAGAGCAAGGTGCTTCAAGAAACTCCATCTGTGAACGCAGATTCATCTTCTTCAAACAGATCATTGCCTTATTTCCATTCAATAAACATCGAATCACCATTTAAGGTTAGAATTCTTCACTCTCTAGATCATCAAAATGTACTAAAGTTTTATTCCTGGTATGAAACTTCTGCCCACCTGTGGCTGGTTTTGGAATATTGTGTTGGAGGAGATCTCATGACCTTATTGAAGCAGGATAGCAAGCTTCCAGAAGATTCAATACATGATCTTGCTCGTGACCTTGTTAGAGCTTTGCAGTTCTTACATTCAAAAGGGATCATTTATTGTGACTTGAAACCATCAAACATCCTGCTAGATGAGAATGGACGTACAAAGCTATGCGATTTTGGACTATCAAGAAAATTGAGTGACATATCTAAAACACCTTCTTCTCTGTTGCCACAAGCAAAACGTGGAACCCCCTGTTACATGGCTCCCGAGTTGTTTCAAGATGGAGGAGTACATTCATATGCTTCTGATTTCTGGGCCTTGGGTTGTGTGCTCTATGAGTGCTACACAGGGCGACCTCCCTTTGTGGGAAAGGAATTTACTCAGTTGGTAAAATCAATCCTCTCGGATCCAACTCCATCCCTTCCGGGCAATCCAAGCCATCCATTTCTTAATTTAATTAGCTCCCTCCTGGTAAAAGATCCCTCAGAAAGAATTCAGTGGTCCGAGATTTGCGGACATGCTTTTTGGAGAACGAAGTTCACTCCATTGCCTTTGCCTCCTCAGCCTGCTTTCACTAACATGGTAGAGCTTTATTCCAAACCATATCTCTCAGAACGGAACGGCGATAGGCCTCTTGCAAACAAGACCCCGCCTAAAAACCGTGAACGGGATTTGAAAGGTCCCCATAGACAGGATGAGAATTCTAATCTGGGATCACGATGTGGTGACACACCGGGTAAGGGTATATCTAGTGGCCGAAAAACTCAAATGAAACATAAAGATAATTCGAGTAATGCTAGGGCTGTCAATCTTTTGCGTCTCTCGAGAATCGCAAAGTCAAACTTGCGAAGAGAAAACGAGAAGGAGAATTACCGGAGGCCATTGCCTAATAGCTCGGAGAACGATGCTGAAGTGAAAATTGAAAACACGGACATGGAACTTGATTTTAACGAGAACGCTGAGGATGATGCACATGATGAACCTGATGGGTCTGAAAACACAGTTTGTTCCCCCGAAGAAAATATTGTTACTCCAAATCAGCAACATACTGAAGTGGCGGCTACACCACCTAGTGTTAGTCCTCAAGTGAAGGCACAAAGGTTTAAAGAAGGTTCTGGGTATGCCATTGATTCTGATATTTCAAAACCATCCCCTAACCTTTCAAAGGTCATGTGGCATCCTTCGGATCTCTCTGTTAGACCAGTGATGCCAAGTAGAAAGTCTGATAAAGGGTCAGAATCAATTCCTTCTCTTCCATTTGAAGCACAGCCGGCTTCTGATTTTACGAAATTGCCCCAGGAGCAGCTGGATACTCTTATCAATAGGATCTTAGCTGTATTTAATGGGAATGTTGCTATTAGTGAGAAGCAAAATGTAATTAGATACCTTGAGATGTTGAGCACCAATGCCGATGCTGCCAATATATTGACCAATGGGCCAATAATGCTGGTTCTTGTTAAAATGCTCAGGCTGTCTAAGGCTTCTGCATTACGTGTTCAGTTGGCTTCAGTCATAGGCTTGCTGATTCGGCATTCTACTTTTATCGACGAAGAGTTGTCAAATTCTGGAATTTTAGGTTCACTAACTGATGGCCTTAGAGACAGGCAAGACAAAGTGAGGAGGTATTCCATGGCTGCTTTGGGTGAGTTGCTGTTTTATATATCTACTCAAAATGAGAATGCTAGGGATAATAATCCGCCAGAATCTCCATCCAAAGACAGCAGACCTTCGTCTGGCTGGCAGGTCTCAAGCCCATTACTTTCACTGGTCACGTCAATTTTACGGAAGGGAGAAGATGATATAACTCAACTTTATGCATTGAGAACAATCGAAAACATCTCTAGTCAAGGAGGGTACTGGGCATCTCGATTCACGAGCCAAGATGTGATTAGCAACCTTTGCTATATATTTAGAGCTCCCGGAAAACAAGAGACAATGAGGCTCGCAGCAGGGTCTTGTTTAGCCCGTTTAGTACGTTTTAACCCTCCAGCCATTCAACAAGTCATCGAGAAACTCTTGTTCAAGGACACCGCATCTGCCCTTGGCAGGGATGATTTCCAGCTAAACCTCATACGAGTTCTCGACTCCATTGCCAAGGAGTCCTCTGTAATTCATGAGAGCCCAGCCATTTTCATCCACGAAATCCTTCCAAGTTTGTCAGTTCTGTACAAGGGAAACAAAGACGGAGATGCCAGATTTTTGTGCTTGAAGATTTGGTTCGATGTGATGGTCATTTTCCTGTACGAAGAATCAGCAGATGAACAAAGACTAGAGGAACTGAAATCCATTTCCGCCAATCATTTCCTACCTCTCTACCCCACTTTGATGGAGGACGAAGATCCCATTCCCATGTACGCACAAAAACTCCTCGTTATGCTCATTGAGTTTAAATTACACCATGTATAA

Network for GWHGAAZE022098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	284	5.30E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	ULK_ULK4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.259
	SRR3591706	second leaf	2.400
	SRR3591707	mature leaf	0.756
	SRR3591708	Shoot apex	18.301
	SRR3591709	Stem	3.161
	SRR3591710	White floral bud	1.455
	SRR3591711	White flower	1.319
	SRR3591712	Green floral bud	1.653
	SRR3591713	Yellow flower	0.530
SRP173429	SRR8316895	Juvenile bud stage	2.281
	SRR8316896	Juvenile bud stage	3.020
	SRR8316897	Juvenile bud stage	1.311
	SRR8316894	Third green stage	0.924
	SRR8316900	Third green stage	1.950
	SRR8316901	Third green stage	1.407
	SRR8316898	Complete white stage	0.254
	SRR8316899	Complete white stage	1.553
	SRR8316903	Complete white stage	0.570
	SRR8316902	Silver flowering stage	0.203
	SRR8316904	Silver flowering stage	0.654
	SRR8316905	Silver flowering stage	0.172
	SRR8316906	Gold flowering stage	0.372
	SRR8316907	Gold flowering stage	0.172
	SRR8316908	Gold flowering stage	0.580
SRP132670	SRR6706286	Control	1.562
	SRR6706287	Light intensity 50%	1.792
	SRR6706288	Light intensity 20%	2.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.563
	CNS0095593	Slightly white alabastrum(diploid) 2	0.925
	CNS0095594	Slightly white alabastrum(diploid) 3	0.575
	CNS0095595	Whole white alabastrum(diploid) 2	1.077
	CNS0095596	Whole white alabastrum(diploid) 3	0.757
	CNS0095597	Whole white alabastrum(diploid) 4	0.474
	CNS0095598	Silvery flower (diploied) 1	1.217
	CNS0095599	Silvery flower (diploied) 2	2.101
	CNS0095600	Silvery flower (diploied) 3	1.240
	CNS0095601	Golden flower (diploid) 1	0.476
	CNS0095602	Golden flower (diploid) 2	1.114
	CNS0095603	Golden flower (diploid) 3	0.959
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.329
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.475
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.988
	CNS0095610	Silvery flower (tetraploid) 1	0.791
	CNS0095611	Silvery flower (tetraploid) 2	1.212
	CNS0095612	Silvery flower (tetraploid) 3	0.814
	CNS0095613	Golden flower (tetraploid) 1	0.128
	CNS0095614	Golden flower (tetraploid) 2	0.552
	CNS0095615	Golden flower (tetraploid) 3	0.401
CRA001975	CRR073297	Stem 1	4.063
	CRR073298	Stem 2	2.977
	CRR073299	Stem 3	3.744
	CRR073300	Leaf 1	1.714
	CRR073301	Leaf 2	1.162
	CRR073302	Leaf 3	1.654
	CRR073303	Juvenile bud 1	0.847
	CRR073304	Juvenile bud 2	0.763
	CRR073305	Juvenile bud 3	1.487
	CRR073306	Third green 1	0.171
	CRR073307	Third green 2	0.150
	CRR073308	Third green 3	0.208
	CRR073309	Second white 1	0.201
	CRR073310	Second white 2	0.504
	CRR073311	Second white 3	0.218
	CRR073312	Silver flowering 1	0.427
	CRR073313	Silver flowering 2	0.275
	CRR073314	Silver flowering 3	0.467
	CRR073315	Gold flowering 1	1.096
	CRR073316	Gold flowering 2	0.980
	CRR073317	Gold flowering 3	0.653
	CRR073318	Tawny withering 1	5.757
	CRR073319	Tawny withering 2	3.456
	CRR073320	Tawny withering 3	6.328