Detail information of GWHGAAZE022110


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008223108.12.13677E-87PREDICTED: uncharacterized protein LOC103322929 [Prunus mume]
trEMBLtr|F6HDH1|F6HDH1_VITVI3E-84Putative uncharacterized protein {ECO:0000313|EMBL:CCB50341.1}
TAIR10AT3G21465.16E-62Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6703654767040004-
GWHAAZE00000006mRNA6703654767040004-
GWHAAZE00000006exon6703965967040004-
GWHAAZE00000006exon6703929167039341-
GWHAAZE00000006exon6703904467039178-
GWHAAZE00000006exon6703886867038948-
GWHAAZE00000006exon6703787567037945-
GWHAAZE00000006exon6703767267037778-
GWHAAZE00000006exon6703725967037380-
GWHAAZE00000006exon6703689867036986-
GWHAAZE00000006exon6703654767036606-
GWHAAZE00000006five_prime_UTR6703983167040004-
GWHAAZE00000006CDS6703965967039830-
GWHAAZE00000006CDS6703929167039341-
GWHAAZE00000006CDS6703904467039178-
GWHAAZE00000006CDS6703886867038948-
GWHAAZE00000006CDS6703787567037945-
GWHAAZE00000006CDS6703767267037778-
GWHAAZE00000006CDS6703725967037380-
GWHAAZE00000006CDS6703689867036986-
GWHAAZE00000006CDS6703654767036606-
Transcript Sequence

Network for GWHGAAZE022110

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0240


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.405
SRR3591706second leaf10.926
SRR3591707mature leaf8.712
SRR3591708Shoot apex32.544
SRR3591709Stem18.649
SRR3591710White floral bud20.897
SRR3591711White flower25.653
SRR3591712Green floral bud30.749
SRR3591713Yellow flower21.771
SRP173429 SRR8316895Juvenile bud stage 17.382
SRR8316896Juvenile bud stage 27.478
SRR8316897Juvenile bud stage 14.632
SRR8316894Third green stage 10.140
SRR8316900Third green stage 28.351
SRR8316901Third green stage 21.108
SRR8316898Complete white stage 7.812
SRR8316899Complete white stage 26.369
SRR8316903Complete white stage 11.798
SRR8316902Silver flowering stage7.022
SRR8316904Silver flowering stage11.709
SRR8316905Silver flowering stage6.157
SRR8316906Gold flowering stage 21.131
SRR8316907Gold flowering stage 22.905
SRR8316908Gold flowering stage 29.578
SRP132670SRR6706286Control21.687
SRR6706287Light intensity 50%22.563
SRR6706288Light intensity 20%24.193
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.917
CNS0095593Slightly white alabastrum(diploid) 218.747
CNS0095594Slightly white alabastrum(diploid) 324.696
CNS0095595Whole white alabastrum(diploid) 222.090
CNS0095596Whole white alabastrum(diploid) 321.289
CNS0095597Whole white alabastrum(diploid) 425.392
CNS0095598Silvery flower (diploied) 112.842
CNS0095599Silvery flower (diploied) 214.932
CNS0095600Silvery flower (diploied) 318.291
CNS0095601Golden flower (diploid) 114.216
CNS0095602Golden flower (diploid) 218.262
CNS0095603Golden flower (diploid) 318.337
CNS0095604Slightly white alabastrum(tetraploid) 125.336
CNS0095605Slightly white alabastrum(tetraploid) 221.750
CNS0095606Slightly white alabastrum(tetraploid) 321.826
CNS0095607Whole white alabastrum(tetraploid) 120.834
CNS0095608Whole white alabastrum(tetraploid) 218.598
CNS0095609Whole white alabastrum(tetraploid) 323.892
CNS0095610Silvery flower (tetraploid) 114.588
CNS0095611Silvery flower (tetraploid) 217.602
CNS0095612Silvery flower (tetraploid) 310.981
CNS0095613Golden flower (tetraploid) 19.556
CNS0095614Golden flower (tetraploid) 216.418
CNS0095615Golden flower (tetraploid) 313.225
CRA001975CRR073297Stem 118.939
CRR073298Stem 215.676
CRR073299Stem 316.077
CRR073300Leaf 117.195
CRR073301Leaf 216.291
CRR073302Leaf 316.984
CRR073303Juvenile bud 113.510
CRR073304Juvenile bud 212.098
CRR073305Juvenile bud 315.418
CRR073306Third green 14.298
CRR073307Third green 24.223
CRR073308Third green 34.233
CRR073309Second white 111.793
CRR073310Second white 27.307
CRR073311Second white 37.872
CRR073312Silver flowering 17.924
CRR073313Silver flowering 210.361
CRR073314Silver flowering 35.492
CRR073315Gold flowering 16.881
CRR073316Gold flowering 29.286
CRR073317Gold flowering 35.866
CRR073318Tawny withering 110.108
CRR073319Tawny withering 210.514
CRR073320Tawny withering 310.428