Gene detail

Detail information of GWHGAAZE022113

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071472.1	0	PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Sesamum indicum]
COG	YP_064731.1	7E-84	helicase
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	0	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|D7T6I2\|D7T6I2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26103.3}
TAIR10	AT5G18620.2	0	chromatin remodeling factor17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67074293	67084068	+
GWHAAZE00000006	mRNA	67074293	67084068	+
GWHAAZE00000006	exon	67074293	67074502	+
GWHAAZE00000006	exon	67075894	67076025	+
GWHAAZE00000006	exon	67076143	67076249	+
GWHAAZE00000006	exon	67076482	67076594	+
GWHAAZE00000006	exon	67077540	67077637	+
GWHAAZE00000006	exon	67077779	67077928	+
GWHAAZE00000006	exon	67078054	67078275	+
GWHAAZE00000006	exon	67078698	67078832	+
GWHAAZE00000006	exon	67078917	67079199	+
GWHAAZE00000006	exon	67079512	67079585	+
GWHAAZE00000006	exon	67079733	67079953	+
GWHAAZE00000006	exon	67080043	67080130	+
GWHAAZE00000006	exon	67080226	67080319	+
GWHAAZE00000006	exon	67080404	67080592	+
GWHAAZE00000006	exon	67080695	67080753	+
GWHAAZE00000006	exon	67080864	67080940	+
GWHAAZE00000006	exon	67081025	67081114	+
GWHAAZE00000006	exon	67081267	67081336	+
GWHAAZE00000006	exon	67081447	67081498	+
GWHAAZE00000006	exon	67081579	67081637	+
GWHAAZE00000006	exon	67081717	67081882	+
GWHAAZE00000006	exon	67082796	67082974	+
GWHAAZE00000006	exon	67083058	67083273	+
GWHAAZE00000006	exon	67083438	67083542	+
GWHAAZE00000006	exon	67084051	67084068	+
GWHAAZE00000006	CDS	67074293	67074502	+
GWHAAZE00000006	CDS	67075894	67076025	+
GWHAAZE00000006	CDS	67076143	67076249	+
GWHAAZE00000006	CDS	67076482	67076594	+
GWHAAZE00000006	CDS	67077540	67077637	+
GWHAAZE00000006	CDS	67077779	67077928	+
GWHAAZE00000006	CDS	67078054	67078275	+
GWHAAZE00000006	CDS	67078698	67078832	+
GWHAAZE00000006	CDS	67078917	67079199	+
GWHAAZE00000006	CDS	67079512	67079585	+
GWHAAZE00000006	CDS	67079733	67079953	+
GWHAAZE00000006	CDS	67080043	67080130	+
GWHAAZE00000006	CDS	67080226	67080319	+
GWHAAZE00000006	CDS	67080404	67080592	+
GWHAAZE00000006	CDS	67080695	67080753	+
GWHAAZE00000006	CDS	67080864	67080940	+
GWHAAZE00000006	CDS	67081025	67081114	+
GWHAAZE00000006	CDS	67081267	67081336	+
GWHAAZE00000006	CDS	67081447	67081498	+
GWHAAZE00000006	CDS	67081579	67081637	+
GWHAAZE00000006	CDS	67081717	67081882	+
GWHAAZE00000006	CDS	67082796	67082974	+
GWHAAZE00000006	CDS	67083058	67083273	+
GWHAAZE00000006	CDS	67083438	67083542	+
GWHAAZE00000006	CDS	67084051	67084068	+

Transcript Sequence
>GWHTAAZE022141 ATGGCCAAAAACTTCAAACCCAAGGATTCTTCCGACGAATCCATGTCCAACGCCACCAATTCTTCCGACGAAGAGCAGATCAATGATCAGGTCAACCAGGAGGAGGACGATGAAGAGGAGCTTGAGGCCGTTGCGAAGACTGTTGATTCCGACGAAGATGTTGCCGATGTTGCCGGAGAGGATCAGGATGAAGAAGAAGAGGAGGACGAGGATGGAAATGCTGTGGGTAATGGTGAAATTAGCAAGCGTGAGAAGGCTAGGCTAAAGGAAATGGAAAGGTTGAAGAAAAAGAAGATACAAGAGATATTGGATGCACAAAATGCTAGTATTGAGGCTGATATGAACAACAAGGGAAAGGGTCGCTTGAAGTATCTCTTGCAGCAAACAGAGTTGTTTGCTCATTTCGCAAAAAGTGATCAGTCTGCATCTCAGAAGAAGACAAAAGGAAGGGGTCGCCATGCATCAAAGGTAACTGAAGAGGAGGAAGATGAAGAATACCTCAAGGATGAAGAAGATGGCCTTTCTGGGGCAGGAAACACACGGCTATTGGCACAGCCATCGTGTATTCAGGGGAAAATGAGGGATTACCAACTTGCTGGGTTGAATTGGCTCATACGACTCTACGAGAATGGTATAAACGGAATCCTTGCAGATGAAATGGGACTTGGTAAAACATTGCAAACCATTTCCTTGCTTGGATATTTGCACGAGTTTAGAGGAATAACTGGTCCTCACATGGTTGTTGCTCCAAAATCTACACTTGGAAACTGGATGAACGAGATTCGACGTTTTTGCCCAATTTTGCGTGCCAGATATACACGTGAAGAATTACTTGTTGCTGGGAAGTTTGATGTTTGTGTCACAAGTTTCGAGATGGCCATAAAAGAAAAGACTGCCTTACGCCGCTTTAGCTGGCGTTATATTATAATTGATGAAGCACATCGAATCAAGAATGAGAATTCACTTCTGTCAAAAACAATGAGAATTTTTAATACTAATTACCGCCTTCTTATTACGGGAACACCGCTTCAGAACAATCTTCATGAGCTTTGGTCTCTTCTGAACTTTCTTCTACCTGAGATTTTTAGCTCTGCGGAAACTTTTGACGAGTGGTTTCAGATTTCTGGTGAAAATGACCAGCAGGAGGTTGTTCAACAGCTTCACAAGGTCCTCCGGCCATTCCTTCTCCGAAGGTTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCTAAGAAGGAAACAATACTTAAAGTTGGCATGTCCCAAATGCAGAAGCAGTATTATAAGGCTTTGTTGCAGAAAGATCTGGAGGTTGTAAATGCTGGTGGAGAGCGAAAGCGCCTTCTCAATATAGCAATGCAGCTTCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGCCCTCCTTATACCACTGGAGATCATCTTGTAACAAATGCTGGAAAAATGGTTCTTTTGGATAAATTACTCCCAAAGCTGAAGCAGCGCGATTCGAGGGTCCTAATATTTTCACAGATGACAAGGCTGCTGGACATTCTTGAAGACTACTTGTTGTACCGTGGACACCAGTACTGCCGAATTGATGGGAATACAGGTGGGGAAGATCGTGATGCTTCCATTGAGGCTTTTAATAAGCCAGGAAGTGAGAAATTTGCCTTCTTATTATCAACTAGAGCTGGAGGCCTTGGCATCAATCTTGCTACTGCAGATGTTGTCATTCTTTATGATAGTGATTGGAACCCACAAGTTGATTTGCAGGCTCAGGATCGCGCGCATAGAATTGGGCAAAAGAAAGAAGTTCAAGTGTTCCGTTTTTGCACTGAGTATACCATTGAGGAGAAAGTGATTGAGAGAGCCTATAAAAAGCTTGCACTTGATGCTTTGGTTATCCAACAAGGACGACTGGCTGAGCAAAAGACTGTTAACAAAGACGAACTCCTGCAAATGGTGAGGTTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGCACAATCACAGATGAGGATATAGATAGGATAATTGCAAAAGGGGAAGAGGCAACCGCTGAACTTGATGCCAAGATGAAGAAATTTACAGAAGACGCGATTAAATTTAAAGTGGACGATTCTGCTGATTTGTATGATTTTGATGATGAAAAGGCAAGTAACATTCCGTACATGTGCTCTGATGAGAACAAGATTGATTTCAAGAAGATTGCCAGTGAAAATTGGATCGAACCACCAAGAAGAGAGCGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACAATGCGCCAAAGTGGTCCGGCAAAAGCTAAAGAGCCTCGAATTCCTCGAATGCCACAGCTGCATGATTTCCAGTTCTTCAACACTCAAAGACTTAGTGAGCTGTATGAGAAAGAAGTACGATATCTCATGCAAGCACATCAGAAGAATCAGAAAGACACAATAGACGTTGGTGAACCAGAAGACTTGGAAGACCCTTTGACTGCTGAAGAGCAGGAAGAAAAAGAGCGATTATTGGAAGAGGGATTCTCAACATGGACTAGGAAAGACTTCAGTACTTTCATCCGGGCTTGTGAGAAGTGTGGGCGGAACAATGTTAAAGGTATTGCAGCTGAAATGGAAGGGAAAACAGAGGAGGAAGTTGAAAGATATGCTGAGGTTTTCAAACGAAGATACAAAGAGTTAAATGATTATGATAGGATAATCAAGAATATTGAAAGAGGGGAGGCTAGAATTTCGCGGAAAGATGAGATCATGAAAGCAATCGGTAAGAAGCTGGATCGTTACAAGAATCCTTGGCTGGAACTGAAAATCCAGTATGGTCAGAACAAAGGGAAATTGTACAATGAAGAATGTGATCGCTTCATGATATGCATGGTTCACAAACTGGGGTATGGCAACTGGGATGAGTTGAAGGCAGCATTTCGAACTTCACCTTTGTTTCGCTTTGATTGGTTCGTGAAGTCTCGAACTACTCAAGAACTTGCAAGGAGATGCGATACCCTCATTCGGTTGGTGGAGAGGGAAAACCAAGAATTTGATGAGAGAGAGAGACAGGCTCGTAAAGAGAAGAAGCTTGCCAAGAACAATACGCCATCAAAACGTGCATCTGCAAGGCCGGTGGCTGAGAGCCCTCCTTCTACCATGAAGAAGCGGAAGCAATCTTCAATGGATGACTACGTGAACTCGGGAAGGAAGAGGAAGTGA

Network for GWHGAAZE022113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13892.7	DBINO	87	137	6.80E-05
PF00176.24	SNF2_N	206	463	8.50E-70
PF00271.32	Helicase_C	486	598	1.50E-19
PF09110.12	HAND	756	838	2.10E-06
PF09111.11	SLIDE	899	1009	6.00E-43

Protein Sequence

>GWHPAAZE022128
MAKNFKPKDSSDESMSNATNSSDEEQINDQVNQEEDDEEELEAVAKTVDSDEDVADVAGEDQDEEEEEDEDGNAVGNGEISKREKARLKEMERLKKKKIQEILDAQNASIEADMNNKGKGRLKYLLQQTELFAHFAKSDQSASQKKTKGRGRHASKVTEEEEDEEYLKDEEDGLSGAGNTRLLAQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPILRARYTREELLVAGKFDVCVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRIFNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKQRDSRVLIFSQMTRLLDILEDYLLYRGHQYCRIDGNTGGEDRDASIEAFNKPGSEKFAFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKVDDSADLYDFDDEKASNIPYMCSDENKIDFKKIASENWIEPPRRERKRNYSESEYFKQTMRQSGPAKAKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQKDTIDVGEPEDLEDPLTAEEQEEKERLLEEGFSTWTRKDFSTFIRACEKCGRNNVKGIAAEMEGKTEEEVERYAEVFKRRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVERENQEFDERERQARKEKKLAKNNTPSKRASARPVAESPPSTMKKRKQSSMDDYVNSGRKRK

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043044	biological_process	ATP-dependent chromatin remodeling
GO:0006338	biological_process	chromatin remodeling
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0031491	molecular_function	nucleosome binding
GO:0005524	molecular_function	ATP binding
GO:0003676	molecular_function	nucleic acid binding
GO:0016818	molecular_function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.498
	SRR3591706	second leaf	7.031
	SRR3591707	mature leaf	5.362
	SRR3591708	Shoot apex	25.964
	SRR3591709	Stem	19.629
	SRR3591710	White floral bud	25.754
	SRR3591711	White flower	18.792
	SRR3591712	Green floral bud	19.498
	SRR3591713	Yellow flower	13.541
SRP173429	SRR8316895	Juvenile bud stage	18.371
	SRR8316896	Juvenile bud stage	25.545
	SRR8316897	Juvenile bud stage	11.867
	SRR8316894	Third green stage	10.313
	SRR8316900	Third green stage	28.440
	SRR8316901	Third green stage	24.754
	SRR8316898	Complete white stage	9.887
	SRR8316899	Complete white stage	22.634
	SRR8316903	Complete white stage	30.265
	SRR8316902	Silver flowering stage	8.879
	SRR8316904	Silver flowering stage	15.158
	SRR8316905	Silver flowering stage	7.088
	SRR8316906	Gold flowering stage	13.438
	SRR8316907	Gold flowering stage	18.105
	SRR8316908	Gold flowering stage	16.843
SRP132670	SRR6706286	Control	25.931
	SRR6706287	Light intensity 50%	25.956
	SRR6706288	Light intensity 20%	27.281
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.232
	CNS0095593	Slightly white alabastrum(diploid) 2	11.764
	CNS0095594	Slightly white alabastrum(diploid) 3	12.380
	CNS0095595	Whole white alabastrum(diploid) 2	12.112
	CNS0095596	Whole white alabastrum(diploid) 3	11.289
	CNS0095597	Whole white alabastrum(diploid) 4	10.817
	CNS0095598	Silvery flower (diploied) 1	14.116
	CNS0095599	Silvery flower (diploied) 2	15.142
	CNS0095600	Silvery flower (diploied) 3	22.544
	CNS0095601	Golden flower (diploid) 1	13.937
	CNS0095602	Golden flower (diploid) 2	17.099
	CNS0095603	Golden flower (diploid) 3	17.183
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.974
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.033
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.963
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.634
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.525
	CNS0095610	Silvery flower (tetraploid) 1	17.497
	CNS0095611	Silvery flower (tetraploid) 2	17.826
	CNS0095612	Silvery flower (tetraploid) 3	21.591
	CNS0095613	Golden flower (tetraploid) 1	6.817
	CNS0095614	Golden flower (tetraploid) 2	11.178
	CNS0095615	Golden flower (tetraploid) 3	9.588
CRA001975	CRR073297	Stem 1	35.797
	CRR073298	Stem 2	29.592
	CRR073299	Stem 3	27.178
	CRR073300	Leaf 1	33.263
	CRR073301	Leaf 2	29.497
	CRR073302	Leaf 3	21.841
	CRR073303	Juvenile bud 1	25.050
	CRR073304	Juvenile bud 2	21.382
	CRR073305	Juvenile bud 3	29.255
	CRR073306	Third green 1	9.428
	CRR073307	Third green 2	6.343
	CRR073308	Third green 3	10.454
	CRR073309	Second white 1	4.960
	CRR073310	Second white 2	9.056
	CRR073311	Second white 3	7.435
	CRR073312	Silver flowering 1	3.960
	CRR073313	Silver flowering 2	5.894
	CRR073314	Silver flowering 3	4.866
	CRR073315	Gold flowering 1	5.869
	CRR073316	Gold flowering 2	11.453
	CRR073317	Gold flowering 3	4.374
	CRR073318	Tawny withering 1	20.050
	CRR073319	Tawny withering 2	17.580
	CRR073320	Tawny withering 3	17.717