Detail information of GWHGAAZE022114


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275431.10PREDICTED: serine/threonine-protein kinase CDL1 [Vitis vinifera]
COGNP_864467.15E-24serine/threonine-protein kinase pknA
Swissprottr|Q9FE20|PBS1_ARATH0Serine/threonine-protein kinase PBS1
trEMBLtr|F6HDG9|F6HDG9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50339.1}
TAIR10AT5G18610.20Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6708688867091037-
GWHAAZE00000006mRNA6708688867091037-
GWHAAZE00000006exon6709089967091037-
GWHAAZE00000006exon6709007667090275-
GWHAAZE00000006exon6708968467089873-
GWHAAZE00000006exon6708815467088545-
GWHAAZE00000006exon6708688867087517-
GWHAAZE00000006CDS6709089967091037-
GWHAAZE00000006CDS6709007667090275-
GWHAAZE00000006CDS6708968467089873-
GWHAAZE00000006CDS6708815467088545-
GWHAAZE00000006CDS6708688867087517-
Transcript Sequence

Network for GWHGAAZE022114

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase942992.40E-45
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.151
SRR3591706second leaf16.207
SRR3591707mature leaf15.195
SRR3591708Shoot apex21.617
SRR3591709Stem18.115
SRR3591710White floral bud20.482
SRR3591711White flower17.973
SRR3591712Green floral bud15.332
SRR3591713Yellow flower9.254
SRP173429 SRR8316895Juvenile bud stage 17.442
SRR8316896Juvenile bud stage 20.004
SRR8316897Juvenile bud stage 8.389
SRR8316894Third green stage 7.591
SRR8316900Third green stage 18.451
SRR8316901Third green stage 19.493
SRR8316898Complete white stage 8.625
SRR8316899Complete white stage 36.783
SRR8316903Complete white stage 15.075
SRR8316902Silver flowering stage7.146
SRR8316904Silver flowering stage10.430
SRR8316905Silver flowering stage4.041
SRR8316906Gold flowering stage 15.018
SRR8316907Gold flowering stage 15.367
SRR8316908Gold flowering stage 15.515
SRP132670SRR6706286Control22.795
SRR6706287Light intensity 50%22.431
SRR6706288Light intensity 20%22.856
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.295
CNS0095593Slightly white alabastrum(diploid) 217.714
CNS0095594Slightly white alabastrum(diploid) 317.322
CNS0095595Whole white alabastrum(diploid) 215.912
CNS0095596Whole white alabastrum(diploid) 39.338
CNS0095597Whole white alabastrum(diploid) 411.893
CNS0095598Silvery flower (diploied) 126.259
CNS0095599Silvery flower (diploied) 227.897
CNS0095600Silvery flower (diploied) 322.952
CNS0095601Golden flower (diploid) 121.707
CNS0095602Golden flower (diploid) 224.701
CNS0095603Golden flower (diploid) 324.448
CNS0095604Slightly white alabastrum(tetraploid) 117.979
CNS0095605Slightly white alabastrum(tetraploid) 212.825
CNS0095606Slightly white alabastrum(tetraploid) 344.324
CNS0095607Whole white alabastrum(tetraploid) 115.327
CNS0095608Whole white alabastrum(tetraploid) 26.237
CNS0095609Whole white alabastrum(tetraploid) 313.297
CNS0095610Silvery flower (tetraploid) 121.278
CNS0095611Silvery flower (tetraploid) 222.275
CNS0095612Silvery flower (tetraploid) 314.880
CNS0095613Golden flower (tetraploid) 110.503
CNS0095614Golden flower (tetraploid) 221.995
CNS0095615Golden flower (tetraploid) 312.162
CRA001975CRR073297Stem 125.216
CRR073298Stem 223.441
CRR073299Stem 328.835
CRR073300Leaf 124.796
CRR073301Leaf 223.109
CRR073302Leaf 320.398
CRR073303Juvenile bud 122.520
CRR073304Juvenile bud 221.920
CRR073305Juvenile bud 333.673
CRR073306Third green 112.142
CRR073307Third green 210.575
CRR073308Third green 310.554
CRR073309Second white 18.117
CRR073310Second white 210.268
CRR073311Second white 37.869
CRR073312Silver flowering 16.493
CRR073313Silver flowering 210.159
CRR073314Silver flowering 36.384
CRR073315Gold flowering 111.710
CRR073316Gold flowering 216.277
CRR073317Gold flowering 314.520
CRR073318Tawny withering 136.865
CRR073319Tawny withering 247.403
CRR073320Tawny withering 333.801