Gene detail

Detail information of GWHGAAZE022118

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN77823.1	1.69037E-85	hypothetical protein VITISV_043444 [Vitis vinifera]
trEMBL	tr\|A5ADI5\|A5ADI5_VITVI	6E-86	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77823.1}
TAIR10	AT2G39100.1	2E-51	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67132521	67138805	+
GWHAAZE00000006	mRNA	67132521	67138805	+
GWHAAZE00000006	exon	67132521	67132912	+
GWHAAZE00000006	exon	67137568	67137705	+
GWHAAZE00000006	exon	67137840	67137897	+
GWHAAZE00000006	exon	67138554	67138805	+
GWHAAZE00000006	CDS	67132521	67132912	+
GWHAAZE00000006	CDS	67137568	67137705	+
GWHAAZE00000006	CDS	67137840	67137897	+
GWHAAZE00000006	CDS	67138554	67138805	+

Transcript Sequence
>GWHTAAZE022146 ATGGAGTCATCGTTTTCGCGAAGATCGTCGAACAGGCATGTATCTCCAACCCTTCGCGATAAACTCCTATCGAAGCGAATCGCACTGTCAATTCTCGACAAATCGTGTGCGATATGCTTGAGACACGTCGACGATCACAGAGCGGCGGTTATTACAGCGTGTATGCACGCTTACTGCATCGAATGCATTCGCAAGTGGAGCAATTTGAAGAGAAATTGCCCTCTCTGCAACTCTCACTTCGATTCTTGGTTCTTCGGAATCAACCTTTCTTCTTCTACCTTCCGCAAAGAGCGATTACCGCCTCTCGTTGACGAGGCTAGAAAGGTTAATCATCATGTAGATGCGTACGAAAGAAGAACTAATCGGTTTACTCGTCGATTTACGGAGCAAAGGATTATTAGAAGACCAAGGGAAGAACAATATACTGGCAGCTGGCCAAGCGCGCCTTTGCCAAGGCGGCGATCGTTTGGACGGTTAGGGAGACTGCCTCACAATGTTATAGCTGAAAGAGTTCTACAGTGGCGCACCAGCATATATGATCGGCATTTGCAGGCTCTGCCTTGTCCTACGAGAAGTTGTCTAAAGCAGGCTGTAGCGGAGAAAAAAGTAGCCAAAGAAAGGATACTAGAAAAAATAGAACCATGGATACGAAGAGAACTGCGGGCTATCCTTTGCGATCCTGATCCATCTGTAATTGTTCATGTGGCCACCTCACTTTTTATCTCAAGCCTCGAAGAAACATGCAGGGTCTCATCAGGAGAGTCCAGTGTAGCTGATAACTATCTTAATCCTTTGCAGCCATTTCTACTTGAACGGACCAATCCGTTCTGGCATGAACTT

Network for GWHGAAZE022118

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	35	77	1.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.859
	SRR3591706	second leaf	2.579
	SRR3591707	mature leaf	7.779
	SRR3591708	Shoot apex	5.308
	SRR3591709	Stem	5.841
	SRR3591710	White floral bud	8.289
	SRR3591711	White flower	8.128
	SRR3591712	Green floral bud	6.841
	SRR3591713	Yellow flower	4.672
SRP173429	SRR8316895	Juvenile bud stage	4.003
	SRR8316896	Juvenile bud stage	5.523
	SRR8316897	Juvenile bud stage	2.749
	SRR8316894	Third green stage	1.808
	SRR8316900	Third green stage	5.283
	SRR8316901	Third green stage	6.245
	SRR8316898	Complete white stage	3.189
	SRR8316899	Complete white stage	8.555
	SRR8316903	Complete white stage	6.130
	SRR8316902	Silver flowering stage	3.290
	SRR8316904	Silver flowering stage	3.905
	SRR8316905	Silver flowering stage	1.308
	SRR8316906	Gold flowering stage	6.710
	SRR8316907	Gold flowering stage	5.505
	SRR8316908	Gold flowering stage	6.771
SRP132670	SRR6706286	Control	6.309
	SRR6706287	Light intensity 50%	6.666
	SRR6706288	Light intensity 20%	5.560
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.780
	CNS0095593	Slightly white alabastrum(diploid) 2	4.624
	CNS0095594	Slightly white alabastrum(diploid) 3	5.446
	CNS0095595	Whole white alabastrum(diploid) 2	9.282
	CNS0095596	Whole white alabastrum(diploid) 3	8.835
	CNS0095597	Whole white alabastrum(diploid) 4	11.801
	CNS0095598	Silvery flower (diploied) 1	5.123
	CNS0095599	Silvery flower (diploied) 2	2.820
	CNS0095600	Silvery flower (diploied) 3	6.218
	CNS0095601	Golden flower (diploid) 1	4.756
	CNS0095602	Golden flower (diploid) 2	7.298
	CNS0095603	Golden flower (diploid) 3	7.813
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.672
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.946
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.800
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.552
	CNS0095610	Silvery flower (tetraploid) 1	7.003
	CNS0095611	Silvery flower (tetraploid) 2	8.571
	CNS0095612	Silvery flower (tetraploid) 3	10.852
	CNS0095613	Golden flower (tetraploid) 1	4.416
	CNS0095614	Golden flower (tetraploid) 2	5.846
	CNS0095615	Golden flower (tetraploid) 3	7.877
CRA001975	CRR073297	Stem 1	8.495
	CRR073298	Stem 2	6.567
	CRR073299	Stem 3	6.207
	CRR073300	Leaf 1	7.760
	CRR073301	Leaf 2	9.952
	CRR073302	Leaf 3	6.123
	CRR073303	Juvenile bud 1	9.225
	CRR073304	Juvenile bud 2	7.727
	CRR073305	Juvenile bud 3	6.475
	CRR073306	Third green 1	10.887
	CRR073307	Third green 2	7.421
	CRR073308	Third green 3	7.197
	CRR073309	Second white 1	6.001
	CRR073310	Second white 2	5.698
	CRR073311	Second white 3	7.227
	CRR073312	Silver flowering 1	6.094
	CRR073313	Silver flowering 2	8.059
	CRR073314	Silver flowering 3	9.761
	CRR073315	Gold flowering 1	4.735
	CRR073316	Gold flowering 2	8.580
	CRR073317	Gold flowering 3	3.111
	CRR073318	Tawny withering 1	4.113
	CRR073319	Tawny withering 2	5.771
	CRR073320	Tawny withering 3	4.998