Gene detail

Detail information of GWHGAAZE022119

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010098337.1	4.3444E-174	Proline-rich receptor-like protein kinase PERK15 [Morus notabilis]
COG	YP_007779934.1	7E-14	Serine/threonine protein kinase
Swissprot	tr\|Q9SA72\|Y1357_ARATH	8E-52	Probable receptor-like protein kinase At1g30570 (Precursor)
trEMBL	tr\|W9RF38\|W9RF38_9ROSA	2E-174	Proline-rich receptor-like protein kinase PERK15 {ECO:0000313\|EMBL:EXB74841.1}
TAIR10	AT3G26700.1	2E-84	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67145499	67147905	+
GWHAAZE00000006	mRNA	67145499	67147905	+
GWHAAZE00000006	exon	67145499	67145652	+
GWHAAZE00000006	exon	67145724	67145956	+
GWHAAZE00000006	exon	67146223	67146349	+
GWHAAZE00000006	exon	67146424	67146495	+
GWHAAZE00000006	exon	67146767	67146950	+
GWHAAZE00000006	exon	67147045	67147177	+
GWHAAZE00000006	exon	67147639	67147905	+
GWHAAZE00000006	CDS	67145499	67145652	+
GWHAAZE00000006	CDS	67145724	67145956	+
GWHAAZE00000006	CDS	67146223	67146349	+
GWHAAZE00000006	CDS	67146424	67146495	+
GWHAAZE00000006	CDS	67146767	67146950	+
GWHAAZE00000006	CDS	67147045	67147177	+
GWHAAZE00000006	CDS	67147639	67147905	+

Transcript Sequence
>GWHTAAZE022147 ATGTCAAGATCAATTGCAGCTATAGCTGGAGGTGGTGGAGGGGCGCTAGCATTATTGGGAGTCGTGATTGGTCTTGTCTGGTTTTGCATTGTTCACTGTAAAAAGCTTTCGAATAGGAGCTCAGATACAGGTTCTTCAGATCCCTCTGCTGTAGCGGAATTGAAAAGAAGTGGGCCCGGTTCATCAGTGCCGTGGCCTCTCTCTGGACCAAACCGAGCCAGGCAGTTCACGTTGGAAGAGTTGGAGAATGCTACTAAGCATTTTGATGAGAGTAATCTCATTGGATGTGGAAGTTTTGGTATGGTTTATAAAGGGTGGCTTCGTGATGGGACGCTTGTGGCTATCAAGAGGCGTCATGGTTCTCCTCGACAAGAGTTTGTTGAAGAGGCAACCTACTTAGCAGGCATTTGGCACCGACACATAGTTACTCTTTTAGGTTATTGTCAGGACAGTGGATTCCAAATGCTAGTTTTTGAACATTTACCGAATGGAAGCATGTGCAATCATCTATATGATACCGGAAAAGATTCGGTAACAAAACTAGAGTTCAAGCAGAGGCTTTCCATAGCTCTTGGGGCAGCTAAAGGTTTATGCCACTTGCATAGCCAACAACCACCTCTATTGCACTGCAATTTTAAAACAGCTAATGTGCTGGTCGATGAGGACTTCATAGCCAAGGTTGCAGATGCAGGGGTAACAAAATTACTCGAAAAAATTGAAGACGCAGGTCCATCTTGCTCAACAAGACTAGATGTTTTCAAAGATCCAGAGGTAGAACGCACTGGGATATTCTCTGAAATTAGCGACATATACAGTTTTGGCGTATTCCTTTTGGAGCTTATAACTGGGCGGGAAATTTCGCGTGTTGACTCCTTTGGACCAGATGGAAGTGTACTTCAATGGGTGGAGACATGCGTGAGTTCAGAAGAGTTCGTTGATCAACGGCTATTTGGGAGCTTCACGGCCAATGGAATGAAGGATCTAATGGCGCTGATGCGACAATGCATAGGTAATGTTGATGGAAAGAGGAGGCCAAAGATGGAAATGGAAATGGTGATGTTAGAGATTGATCAGATTCTTGAGAAAGAGATCATGCTCACTACTGTCATGGTTGAAGGAACTACTACTGCTACAGTTACTCTTGGTAGCCAACTCTTCACTTCAAACTAA

Network for GWHGAAZE022119

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	92	348	3.60E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.440
	SRR3591706	second leaf	1.952
	SRR3591707	mature leaf	0.098
	SRR3591708	Shoot apex	2.751
	SRR3591709	Stem	2.071
	SRR3591710	White floral bud	8.535
	SRR3591711	White flower	0.441
	SRR3591712	Green floral bud	36.963
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	30.687
	SRR8316896	Juvenile bud stage	33.761
	SRR8316897	Juvenile bud stage	15.047
	SRR8316894	Third green stage	15.679
	SRR8316900	Third green stage	41.434
	SRR8316901	Third green stage	38.094
	SRR8316898	Complete white stage	8.908
	SRR8316899	Complete white stage	105.283
	SRR8316903	Complete white stage	8.463
	SRR8316902	Silver flowering stage	0.265
	SRR8316904	Silver flowering stage	0.317
	SRR8316905	Silver flowering stage	0.175
	SRR8316906	Gold flowering stage	0.266
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	47.680
	SRR6706287	Light intensity 50%	54.225
	SRR6706288	Light intensity 20%	69.895
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.639
	CNS0095593	Slightly white alabastrum(diploid) 2	62.915
	CNS0095594	Slightly white alabastrum(diploid) 3	37.206
	CNS0095595	Whole white alabastrum(diploid) 2	35.686
	CNS0095596	Whole white alabastrum(diploid) 3	34.518
	CNS0095597	Whole white alabastrum(diploid) 4	35.832
	CNS0095598	Silvery flower (diploied) 1	0.591
	CNS0095599	Silvery flower (diploied) 2	0.347
	CNS0095600	Silvery flower (diploied) 3	0.290
	CNS0095601	Golden flower (diploid) 1	0.235
	CNS0095602	Golden flower (diploid) 2	0.316
	CNS0095603	Golden flower (diploid) 3	0.252
	CNS0095604	Slightly white alabastrum(tetraploid) 1	58.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	124.410
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.893
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.740
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	0.134
	CNS0095612	Silvery flower (tetraploid) 3	0.411
	CNS0095613	Golden flower (tetraploid) 1	0.026
	CNS0095614	Golden flower (tetraploid) 2	0.166
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	65.076
	CRR073298	Stem 2	65.313
	CRR073299	Stem 3	51.034
	CRR073300	Leaf 1	83.643
	CRR073301	Leaf 2	88.718
	CRR073302	Leaf 3	72.567
	CRR073303	Juvenile bud 1	71.633
	CRR073304	Juvenile bud 2	66.346
	CRR073305	Juvenile bud 3	90.712
	CRR073306	Third green 1	9.285
	CRR073307	Third green 2	4.146
	CRR073308	Third green 3	6.377
	CRR073309	Second white 1	0.126
	CRR073310	Second white 2	0.356
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.063
	CRR073316	Gold flowering 2	0.133
	CRR073317	Gold flowering 3	0.072
	CRR073318	Tawny withering 1	1.191
	CRR073319	Tawny withering 2	1.432
	CRR073320	Tawny withering 3	3.344