Gene detail

Detail information of GWHGAAZE022149

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090964.1	0	PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Sesamum indicum]
COG	YP_007142562.1	0	isoleucyl-tRNA synthetase
Swissprot	tr\|P93736\|SYV_ARATH	3E-11	Valine--tRNA ligase
trEMBL	tr\|K4AXX4\|K4AXX4_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g080810.2.1}
TAIR10	AT5G49030.3	0	tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67652132	67659471	-
GWHAAZE00000006	mRNA	67652132	67659471	-
GWHAAZE00000006	exon	67659375	67659471	-
GWHAAZE00000006	exon	67659046	67659200	-
GWHAAZE00000006	exon	67658864	67658965	-
GWHAAZE00000006	exon	67657734	67657953	-
GWHAAZE00000006	exon	67656441	67656553	-
GWHAAZE00000006	exon	67655839	67655907	-
GWHAAZE00000006	exon	67655386	67655493	-
GWHAAZE00000006	exon	67654420	67654567	-
GWHAAZE00000006	exon	67653146	67653377	-
GWHAAZE00000006	exon	67652399	67652685	-
GWHAAZE00000006	exon	67652132	67652268	-
GWHAAZE00000006	CDS	67659375	67659471	-
GWHAAZE00000006	CDS	67659046	67659200	-
GWHAAZE00000006	CDS	67658864	67658965	-
GWHAAZE00000006	CDS	67657734	67657953	-
GWHAAZE00000006	CDS	67656441	67656553	-
GWHAAZE00000006	CDS	67655839	67655907	-
GWHAAZE00000006	CDS	67655386	67655493	-
GWHAAZE00000006	CDS	67654420	67654567	-
GWHAAZE00000006	CDS	67653146	67653377	-
GWHAAZE00000006	CDS	67652399	67652685	-
GWHAAZE00000006	CDS	67652132	67652268	-

Transcript Sequence
>GWHTAAZE022177 ATGACATATTGTTCTACTTATTCCAGCAGTGAGTTTTGTCTTTCGTCAAAACGAAGATCTCGCGGACCTGTTATGGCTGCAAAGAAAGCATCCAAAGGGACCAAGCAAGAAGATGGAAAGTACAAGCACACAGTTGATCTACCTAATACAACATTTGGCATGAGGGCAAACTCTGCAGCAAGGGAGCCTGAACTGCAGAAATTGTGGGATGAAAACCAGGTGTTTAAGAGAGTTTCCGACAGGAATACTGGGGGTAATTTCATTCTTCATGACGGTCCTCCTTATGCCAATGGTGATTTACATATTGGACATGCTTTAAATAAGATTTTGAAGGATATTATTAATCGTTATAAGCTTCTTCAAAATTACAAAGTTCATTATGTGCCTGGTTGGGATTGCCATGGACTACCAATTGAGTTGAAAGGCAAGATTAGTTTCTGTGCTGTTCTGGTCTATTTTTGGCCTTCATTCCTAACTCACTCCAAGTTACACCCTGAGCTTCTGCTTCTTTTTATTAAGTGCATAGAGGGAAAATCTGCTGTACAGACACTGGTTTTAGGGAAAAGGCAGAAAATTTTGCAGTCATTGGATCAAGATGCTAGAACAGAGCTTACTCCATTAAAATTGAGAGCGAAGGCTGCAAAATTTGCCAAAACAACTGTGAAGACACAAATGGCATCATTTAAGCGATTTGGAGTATGGGCGGACTGGGATCATCCTTATCTAACACTCGATCCAGAGTATGAAGCTGCTCAGATTGAAGTGTTTGGCCAGATGGTCTTTCAAGGGTATATCTTCAGAGGCAGAAAACCTGTCCATTGGAGTCCATCGTCACGAACTGCTCTGGCAGAGGCAGAGCTGGAGTATCCTGAGGGGCATGTTTCAAAGAGCATATATGCCATTTTTAGATTACTCAATGCACCAACTTCAGGTGGCCCACTAGAGGAATTTTTTCCTAATGTGTGCTTGGCCATTTGGACTACGACTCCATGGACTATTCCAGCCAATGCTGCTGTTGCTGTGAATGCAAAGCTTCAATATGCTGTTGTTGAAGTGCAGTCACCTTCAGTAGATTTTTCTACGTCTTCTGAAGATGGAAATAGGAGACTTGGTATTGTTTTGAAGGAGCAAAAAAAGCCCTTTCTTATTGTAGCATTGGACCTTGTTTCAACGTTGGAATCAAAATGGGGCGCGAAGCTACTTGTCAAGAAAACAATACTTGGTTCAGATCTTGAAAATTGCAGGTATATTCACCCTGTAGGTAGCAGAGAATGCCCTGTTGTCATTGGAGGAGATTACATTACAACCGAGTCAGGGACTGGACTAGTACATACAGCCCCCGGTCATGGTCAAGAGGATTACATAACCGGGTTAAAATACAGTTTGCCTATCCTTTCCCCAGTAGATGATGAGGGAAAGTTCACCGAGGAAGCTGGACAGTTTAGTGGCCTAGATGTACTTGGGGGTGGAAATGCTGCTGTTGTTGAATACTTAGATGAACACTCGTTACTTATAGTAGCCGAACCATACAAGCACAAGTATCCATATGATTGGCGAACAAAAAAGCCTACAATATTTAGGGCAACCGAGCAATGGTTCGCATCTGTAGAAGGCTTCCGGAAGGCTGCTATGGATGCAATTAGCCAAGTAACATGGATTCCATCGCAG

Network for GWHGAAZE022149

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00133.23	tRNA-synt_1	65	140	2.80E-26
PF00133.23	tRNA-synt_1	194	555	1.30E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01870	IARS, ileS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0002161	molecular_function	aminoacyl-tRNA editing activity
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.988
	SRR3591706	second leaf	41.446
	SRR3591707	mature leaf	34.501
	SRR3591708	Shoot apex	21.907
	SRR3591709	Stem	11.858
	SRR3591710	White floral bud	6.514
	SRR3591711	White flower	13.176
	SRR3591712	Green floral bud	10.615
	SRR3591713	Yellow flower	11.256
SRP173429	SRR8316895	Juvenile bud stage	10.247
	SRR8316896	Juvenile bud stage	9.939
	SRR8316897	Juvenile bud stage	6.620
	SRR8316894	Third green stage	5.059
	SRR8316900	Third green stage	15.294
	SRR8316901	Third green stage	11.050
	SRR8316898	Complete white stage	4.271
	SRR8316899	Complete white stage	11.753
	SRR8316903	Complete white stage	7.101
	SRR8316902	Silver flowering stage	5.042
	SRR8316904	Silver flowering stage	8.847
	SRR8316905	Silver flowering stage	4.843
	SRR8316906	Gold flowering stage	15.342
	SRR8316907	Gold flowering stage	13.469
	SRR8316908	Gold flowering stage	14.525
SRP132670	SRR6706286	Control	16.007
	SRR6706287	Light intensity 50%	17.170
	SRR6706288	Light intensity 20%	18.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.587
	CNS0095593	Slightly white alabastrum(diploid) 2	2.292
	CNS0095594	Slightly white alabastrum(diploid) 3	2.968
	CNS0095595	Whole white alabastrum(diploid) 2	4.234
	CNS0095596	Whole white alabastrum(diploid) 3	1.947
	CNS0095597	Whole white alabastrum(diploid) 4	2.537
	CNS0095598	Silvery flower (diploied) 1	11.601
	CNS0095599	Silvery flower (diploied) 2	9.784
	CNS0095600	Silvery flower (diploied) 3	16.150
	CNS0095601	Golden flower (diploid) 1	6.996
	CNS0095602	Golden flower (diploid) 2	19.336
	CNS0095603	Golden flower (diploid) 3	16.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.258
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.699
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.999
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.925
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.946
	CNS0095610	Silvery flower (tetraploid) 1	19.131
	CNS0095611	Silvery flower (tetraploid) 2	21.707
	CNS0095612	Silvery flower (tetraploid) 3	18.375
	CNS0095613	Golden flower (tetraploid) 1	5.942
	CNS0095614	Golden flower (tetraploid) 2	15.716
	CNS0095615	Golden flower (tetraploid) 3	14.190
CRA001975	CRR073297	Stem 1	15.611
	CRR073298	Stem 2	13.706
	CRR073299	Stem 3	12.070
	CRR073300	Leaf 1	13.960
	CRR073301	Leaf 2	10.282
	CRR073302	Leaf 3	9.657
	CRR073303	Juvenile bud 1	7.919
	CRR073304	Juvenile bud 2	8.967
	CRR073305	Juvenile bud 3	13.340
	CRR073306	Third green 1	3.533
	CRR073307	Third green 2	2.817
	CRR073308	Third green 3	3.593
	CRR073309	Second white 1	7.614
	CRR073310	Second white 2	5.798
	CRR073311	Second white 3	7.086
	CRR073312	Silver flowering 1	6.221
	CRR073313	Silver flowering 2	7.165
	CRR073314	Silver flowering 3	6.280
	CRR073315	Gold flowering 1	22.797
	CRR073316	Gold flowering 2	44.116
	CRR073317	Gold flowering 3	28.214
	CRR073318	Tawny withering 1	8.566
	CRR073319	Tawny withering 2	3.416
	CRR073320	Tawny withering 3	4.353