Gene detail

Detail information of GWHGAAZE022156

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649716.1	0	PREDICTED: ubiquitin-like-specific protease ESD4 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q94F30\|ESD4_ARATH	2E-152	Ubiquitin-like-specific protease ESD4
trEMBL	tr\|F6HE59\|F6HE59_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50311.1}
TAIR10	AT4G15880.1	3E-105	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67747711	67752135	+
GWHAAZE00000006	mRNA	67747711	67752135	+
GWHAAZE00000006	exon	67747711	67748370	+
GWHAAZE00000006	exon	67748467	67748546	+
GWHAAZE00000006	exon	67748628	67748721	+
GWHAAZE00000006	exon	67748804	67748902	+
GWHAAZE00000006	exon	67750513	67750602	+
GWHAAZE00000006	exon	67750699	67750818	+
GWHAAZE00000006	exon	67751340	67751443	+
GWHAAZE00000006	exon	67751671	67751743	+
GWHAAZE00000006	exon	67752073	67752135	+
GWHAAZE00000006	CDS	67747711	67748370	+
GWHAAZE00000006	CDS	67748467	67748546	+
GWHAAZE00000006	CDS	67748628	67748721	+
GWHAAZE00000006	CDS	67748804	67748902	+
GWHAAZE00000006	CDS	67750513	67750602	+
GWHAAZE00000006	CDS	67750699	67750818	+
GWHAAZE00000006	CDS	67751340	67751443	+
GWHAAZE00000006	CDS	67751671	67751743	+
GWHAAZE00000006	CDS	67752073	67752135	+

Transcript Sequence
>GWHTAAZE022184 ATGCATCAAAATCCTGATCTTACGGTTTCGTCGAAAAGTGCAGCTTCGAGAATTCATCGTTACCCCGAGCCCTCACAGCGAATTCCGAGAGAGGTTCATGCACCTTGCAGGACATCTAGATTTGGATTCTTTGCGAAGAGGAATAGTACTAATGTAGTTAACAATAGCGCAATTGATGCTAATGCAATGGGGAATACTATTTCGAACAATTATTATGATAGGGCAAAGAAGATAGCAGTTAGTACTTTGCATTATTTTAAGAAAGAAAAGGAAGTGGTTGACATTGAAGAAGAGACTGTCAGGGAGGATGTATGCGAGGATTCGGATTCGAGTATTGAAGTGATTGAGATCGAGGAAGATAAAGAGGAAAATAATGGGATTGTGGATAATTCAATAGAAACAGATTACAAGGTTGGAGTTGCAGGGCGTAATTTTCAACATTCATCTTCTTCTGTGGATTCGGATTTAACAAATTCGAAGGTTGACTCCGCGGGGAAGATGTTGGATTTATTGTCGCTGAAGGAGCCTTTGCATAAGCAATTGTATGAATCTGTGAAGAGAAGGGATAGTAAGTTGAGTAGTTTGGATTTTCAGATTCAATATAGTGAGCGGCAGCGCGAAATATATCAATTACTTCGTCCCTCAAAGAAACAAGAGGAGGATGTAGTTAGGGAACCTTTTATGCCTCTTACGAAGGAGGAAGGTGCTGAGGTTGCTCATGCCTTATCCAATTCGAATCGGAGGAAGGTTTTGGTCAATCATGTGAATTCAAACATTCAGATTACTGGAGAATTATTGCAGTGTTTAAGACCAGGAGCATGGTTGAATGATGAGGTTATTAATTTGTATCTTGAGTTGCTGAAAGAGAGGGAAAAGAGGGAGCCCAAAAGGTTTTTGAAATGTCATTTCTTTAACACATTCTTTTACAAGAAGTTATATGGGAGGAGTGGGTATGATTTCAAATCAGTTAGAAGGTGGACTACCCAGAGGAAGTTGGGATACAGCCTTATTGAGTGTGACAAAATTTTTGTCCCTATCCACAAAGAAGTGCATTGGTGCTTAGCAGTTATCAACATGAAAGATGAGAAATTCCAGTATCTTGATTCACTAAGAGGACGTGATAAACAAGTAATGAAAGTTCTGGCTAGATACATTGCGGACGAGGTCAAGGACAAGAGTGGGAAAGATATTAATGTTAGTTCCTGGAAGCAAGAATATGTTGAGGACCTTCCTGATCAGGAAAATGGGTTCGACTGTGGCATGTTCATGATCAAATATATTGACTTCTACAGCAGGGATGTCGGGCTATGTTTCAACCAGGAGCATATGCCGTATTTTCGGCTGAGAACTGCCAAGGAGATTTTGCAATTGAAGGCTGACTGA

Network for GWHGAAZE022156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	274	454	3.20E-42

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.968
	SRR3591706	second leaf	9.105
	SRR3591707	mature leaf	9.688
	SRR3591708	Shoot apex	11.961
	SRR3591709	Stem	11.026
	SRR3591710	White floral bud	13.980
	SRR3591711	White flower	15.156
	SRR3591712	Green floral bud	11.401
	SRR3591713	Yellow flower	10.879
SRP173429	SRR8316895	Juvenile bud stage	6.761
	SRR8316896	Juvenile bud stage	8.315
	SRR8316897	Juvenile bud stage	5.168
	SRR8316894	Third green stage	4.997
	SRR8316900	Third green stage	12.882
	SRR8316901	Third green stage	11.019
	SRR8316898	Complete white stage	4.486
	SRR8316899	Complete white stage	13.060
	SRR8316903	Complete white stage	9.427
	SRR8316902	Silver flowering stage	7.376
	SRR8316904	Silver flowering stage	9.737
	SRR8316905	Silver flowering stage	4.261
	SRR8316906	Gold flowering stage	9.099
	SRR8316907	Gold flowering stage	13.241
	SRR8316908	Gold flowering stage	14.732
SRP132670	SRR6706286	Control	6.189
	SRR6706287	Light intensity 50%	6.146
	SRR6706288	Light intensity 20%	6.377
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.752
	CNS0095593	Slightly white alabastrum(diploid) 2	10.522
	CNS0095594	Slightly white alabastrum(diploid) 3	5.465
	CNS0095595	Whole white alabastrum(diploid) 2	5.639
	CNS0095596	Whole white alabastrum(diploid) 3	5.877
	CNS0095597	Whole white alabastrum(diploid) 4	4.601
	CNS0095598	Silvery flower (diploied) 1	8.158
	CNS0095599	Silvery flower (diploied) 2	8.171
	CNS0095600	Silvery flower (diploied) 3	11.699
	CNS0095601	Golden flower (diploid) 1	7.692
	CNS0095602	Golden flower (diploid) 2	10.146
	CNS0095603	Golden flower (diploid) 3	10.153
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.210
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.955
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.722
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.397
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.210
	CNS0095610	Silvery flower (tetraploid) 1	14.674
	CNS0095611	Silvery flower (tetraploid) 2	12.033
	CNS0095612	Silvery flower (tetraploid) 3	11.065
	CNS0095613	Golden flower (tetraploid) 1	9.936
	CNS0095614	Golden flower (tetraploid) 2	13.677
	CNS0095615	Golden flower (tetraploid) 3	9.252
CRA001975	CRR073297	Stem 1	6.243
	CRR073298	Stem 2	5.051
	CRR073299	Stem 3	3.940
	CRR073300	Leaf 1	6.170
	CRR073301	Leaf 2	6.427
	CRR073302	Leaf 3	3.289
	CRR073303	Juvenile bud 1	4.299
	CRR073304	Juvenile bud 2	1.734
	CRR073305	Juvenile bud 3	4.599
	CRR073306	Third green 1	2.469
	CRR073307	Third green 2	1.460
	CRR073308	Third green 3	2.222
	CRR073309	Second white 1	1.679
	CRR073310	Second white 2	2.809
	CRR073311	Second white 3	2.688
	CRR073312	Silver flowering 1	1.244
	CRR073313	Silver flowering 2	1.691
	CRR073314	Silver flowering 3	1.326
	CRR073315	Gold flowering 1	3.938
	CRR073316	Gold flowering 2	4.594
	CRR073317	Gold flowering 3	2.388
	CRR073318	Tawny withering 1	6.622
	CRR073319	Tawny withering 2	4.651
	CRR073320	Tawny withering 3	6.489