Gene detail

Detail information of GWHGAAZE022157

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271765.1	PREDICTED: kinesin-13A [Vitis vinifera]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|D7T6C8\|D7T6C8_VITVI	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67755827	67764952	-
GWHAAZE00000006	mRNA	67755827	67764952	-
GWHAAZE00000006	exon	67764731	67764952	-
GWHAAZE00000006	exon	67763981	67764196	-
GWHAAZE00000006	exon	67763860	67763873	-
GWHAAZE00000006	exon	67762695	67762750	-
GWHAAZE00000006	exon	67762187	67762362	-
GWHAAZE00000006	exon	67760841	67760945	-
GWHAAZE00000006	exon	67760615	67760692	-
GWHAAZE00000006	exon	67759961	67760042	-
GWHAAZE00000006	exon	67758347	67758509	-
GWHAAZE00000006	exon	67757689	67758021	-
GWHAAZE00000006	exon	67757312	67757530	-
GWHAAZE00000006	exon	67756638	67757217	-
GWHAAZE00000006	exon	67756478	67756543	-
GWHAAZE00000006	exon	67755827	67756009	-
GWHAAZE00000006	CDS	67764731	67764952	-
GWHAAZE00000006	CDS	67763981	67764196	-
GWHAAZE00000006	CDS	67763860	67763873	-
GWHAAZE00000006	CDS	67762695	67762750	-
GWHAAZE00000006	CDS	67762187	67762362	-
GWHAAZE00000006	CDS	67760841	67760945	-
GWHAAZE00000006	CDS	67760615	67760692	-
GWHAAZE00000006	CDS	67759961	67760042	-
GWHAAZE00000006	CDS	67758347	67758509	-
GWHAAZE00000006	CDS	67757689	67758021	-
GWHAAZE00000006	CDS	67757312	67757530	-
GWHAAZE00000006	CDS	67756638	67757217	-
GWHAAZE00000006	CDS	67756478	67756543	-
GWHAAZE00000006	CDS	67755827	67756009	-

Transcript Sequence
>GWHTAAZE022185 ATGGGTGGCCAGATGCAACAGAGCAATGCTGCGGCAACTGCTCTGTATGATCACCCTGCCGCCGGGGGAGGAGGGTCCCTGAACAATTCAGGTGGTCCCTCTGGCGATGCTGGAGACGCGGTCATGGCACGCTGGCTCCAGTCTGCAGGGTTGCAACATCTGGCCTCACCCTTGGCTTCCACCGGGATTGATCATCGACACCTACCCAATCTCCTCATGCAGGGTTATGGAGCACAATCTACTGAAGAGAGGCAGAGGATTAACAAATTAATGAGAAACCTTAATTTCAATTGCGAATCTGGTTCTGAGCCATACACTCCTACTGCCCAAAGTTCCAGTGCTCCTGCAGATACCTTTTATTCTTCTGAGTTCAGGGGGGATTTTGGAGCTGGGCTTTTGGATCTACATGCTATGGATGACACAGAGCTTCTATCTGAGTTGCATCGTGGGAGTCAGATTTTCAAAACAACACTTTTTGGGCATATGTCATGCAAGGAATGGATTGGAGATCCATTTGAGCCATCACCTTTTATGCCTGCTGTCAGTAAAGAATTTGATAGTGACGTAGATATGATGACCAGCCGCCAGCAAAGAGGGCAAACAGATGCAGATTCCTCAGTTGCAGTTCCTGCAATTGAGAAAGAAAATACAAAGGAAAGCAATGTGGCTAAGATTAGAGTTGTGGTGCGTAAAAGACCTCTGAACAAGAAGGAAGTTTCTCGTAAGGAGGAGGACATTGTGACTGTATCTAATAGTGCTTATTTAACTGTCCATGAGCCCAAGCTAAAGGTGGACTTGACTGCTTACGTGGAGAAGCATGAGTTCTGCTTTGACGCTGTTCTAGATGAGCATGTAACGAATGATGAGGTATATCGCAGTACTGTAGAGCCAATCATCCCAACCATTTTTCAGCGAACAAAGGCGACATGTTTTGCTTATGGTCAGACAGGTAGCGGTAAGACGTACACAATGCAACCTTTACCTCTCAGGGCAGCAGAACACCTCGTTAGATTATTGCATCAGCCCACTTACCGTAGTCAGAAATTCAAGCTGTGGCTTAGTTATTTCGAGATATATGGCGGAAAACTTTATGATCTTCTAAGTGAGAGGAAGAAACTCTGTATGAGGGAAGATGGACGGCAACAGGTTTGCATTGTTGGACTGCAAGAGTTTGAAGTTTTAGATGTACAGATTGTTAAAGAATTCATTGAGAAGGGAAATGCAGCAAGAAGTACAGGCTCTACTGGTGCTAATGAGGAGTCTTCAAGGTCACATGCTATATTACAACTTGCTGTTAAAAAGCACAGTGAGATAAAAGAATCCAAGAGGAATAATAATGATGGCAATGAGTCAAAGGGTGGGAAGCTTGTGGGAAAGATTTCTTTTATAGATCTTGCTGGTAGTGAGAGAGGTGCCGACACAACTGACAATGATCGACAAACACGGATGGAGGGAGCTGAAATTAACAAGTCTCTTTTGGCTCTTAAGGAGTGTATTCGTGCTCTTGATAATGACCAGCTTCATATTCCATTTCGTGGGAGTAAACTTACTGAGGTGCTTCGGGACTCCTTTGTTGGAAATTCAAGGACGGTTATGATTTCCTGCATTTCTCCAAATGCTGGTTCATGTGAACATACACTCAATACATTGAGATACGCTGATCGGGTTAAAAGTCTCTCCAAAAGTGGAAATTCAAAGAAGGATCAGGTGCCGAGCTCATTACCACCCGCTAGTAAAGATGTTTCATCATCAACGTCTATGGCTGTTTCCGCTGACGTGGACGACATTTATGAGCAACATCGAGAAGTTAAATTGGTGGATGTAGTAAGAAGGGTTATAGCTGAAAAAGAAAATCTTTCTTATAGCCATACTGCTGATTTTGATAAACAACCTTCAAGTTATTCCTTTAATGGTCAGGATGAAGGTGGGCCCACTTCTGGCGTTATGGACAAGGAGAGGGTTGATACGAAAACCACCTTTGTTGGGTCAACGAGCCAAAAAATGTATTCATCGTCACTTCCCCAGAACTCAGTTGATACAGAAGAAAAGGTGCAGAAGGTGTCACCACCTCGTAGAAAATCGGAAAAGTCCGGGAGCTTGATGAAAAAAGTTGGCAGTAGCTCCGAACTGTCGACCAGTTACAAGCAGCAGAGCATAAGCAATTCTAACACAAATAATTTCGGCTCTAAACAATATGAACCGGAGACGCCTCCTAGTGATGGGAATATCAATGAGATACTCGAGGAAGAAGAAGCGCTAATCACAGCCCATAGAAAAGAGATTGAAGATACAATGGAGATTGTTCGTGAAGAAATGAAACTGTTGGCTGAAGTGGACCAACCAGGCAGCCTCATTGACAATTATGTGACCCAACTGAGTTTTGTGCTGTCCCGCAAAGCAGCAAGTCTGGTCAGCCTACAAGCTCGCCTTGCCAGGTTTCAACATCGGTTAAAAGAACAGGAGATTCTTAGTAGGAAGCGGATTCCCCGCTAG

Network for GWHGAAZE022157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.24	Kinesin	230	558	3.40E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	biological_process	microtubule-based movement
GO:0003777	molecular_function	microtubule motor activity
GO:0005524	molecular_function	ATP binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	77.881
	SRR3591706	second leaf	27.217
	SRR3591707	mature leaf	22.066
	SRR3591708	Shoot apex	38.397
	SRR3591709	Stem	96.497
	SRR3591710	White floral bud	65.734
	SRR3591711	White flower	25.685
	SRR3591712	Green floral bud	41.236
	SRR3591713	Yellow flower	17.558
SRP173429	SRR8316895	Juvenile bud stage	19.888
	SRR8316896	Juvenile bud stage	26.373
	SRR8316897	Juvenile bud stage	15.841
	SRR8316894	Third green stage	13.564
	SRR8316900	Third green stage	35.297
	SRR8316901	Third green stage	35.130
	SRR8316898	Complete white stage	30.377
	SRR8316899	Complete white stage	47.303
	SRR8316903	Complete white stage	48.872
	SRR8316902	Silver flowering stage	16.201
	SRR8316904	Silver flowering stage	22.274
	SRR8316905	Silver flowering stage	12.141
	SRR8316906	Gold flowering stage	24.917
	SRR8316907	Gold flowering stage	22.923
	SRR8316908	Gold flowering stage	34.609
SRP132670	SRR6706286	Control	37.779
	SRR6706287	Light intensity 50%	39.169
	SRR6706288	Light intensity 20%	41.139
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.415
	CNS0095593	Slightly white alabastrum(diploid) 2	17.378
	CNS0095594	Slightly white alabastrum(diploid) 3	16.989
	CNS0095595	Whole white alabastrum(diploid) 2	19.123
	CNS0095596	Whole white alabastrum(diploid) 3	22.255
	CNS0095597	Whole white alabastrum(diploid) 4	20.042
	CNS0095598	Silvery flower (diploied) 1	14.135
	CNS0095599	Silvery flower (diploied) 2	12.247
	CNS0095600	Silvery flower (diploied) 3	24.866
	CNS0095601	Golden flower (diploid) 1	10.790
	CNS0095602	Golden flower (diploid) 2	17.738
	CNS0095603	Golden flower (diploid) 3	17.948
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.525
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.432
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.666
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.909
	CNS0095610	Silvery flower (tetraploid) 1	22.720
	CNS0095611	Silvery flower (tetraploid) 2	22.251
	CNS0095612	Silvery flower (tetraploid) 3	27.548
	CNS0095613	Golden flower (tetraploid) 1	10.558
	CNS0095614	Golden flower (tetraploid) 2	17.765
	CNS0095615	Golden flower (tetraploid) 3	23.524
CRA001975	CRR073297	Stem 1	42.102
	CRR073298	Stem 2	35.190
	CRR073299	Stem 3	31.668
	CRR073300	Leaf 1	44.859
	CRR073301	Leaf 2	37.102
	CRR073302	Leaf 3	28.382
	CRR073303	Juvenile bud 1	32.328
	CRR073304	Juvenile bud 2	42.641
	CRR073305	Juvenile bud 3	42.985
	CRR073306	Third green 1	40.469
	CRR073307	Third green 2	36.465
	CRR073308	Third green 3	38.975
	CRR073309	Second white 1	10.726
	CRR073310	Second white 2	15.600
	CRR073311	Second white 3	10.943
	CRR073312	Silver flowering 1	12.754
	CRR073313	Silver flowering 2	12.774
	CRR073314	Silver flowering 3	9.792
	CRR073315	Gold flowering 1	16.439
	CRR073316	Gold flowering 2	22.662
	CRR073317	Gold flowering 3	12.413
	CRR073318	Tawny withering 1	46.258
	CRR073319	Tawny withering 2	35.723
	CRR073320	Tawny withering 3	59.789