Gene detail

Detail information of GWHGAAZE022163

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABK22081.1	0	unknown [Picea sitchensis]
COG	YP_007712952.1	2E-16	Eukaryotic translation initiation factor 2 alpha subunit
trEMBL	tr\|A9NN70\|A9NN70_PICSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ABK22081.1}
TAIR10	AT2G40290.1	6E-143	Eukaryotic translation initiation factor 2 subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67832956	67839232	+
GWHAAZE00000006	mRNA	67832956	67839232	+
GWHAAZE00000006	exon	67832956	67833339	+
GWHAAZE00000006	exon	67835664	67835720	+
GWHAAZE00000006	exon	67835799	67835885	+
GWHAAZE00000006	exon	67836002	67836148	+
GWHAAZE00000006	exon	67836286	67836390	+
GWHAAZE00000006	exon	67838411	67838509	+
GWHAAZE00000006	exon	67838700	67839232	+
GWHAAZE00000006	CDS	67832956	67833339	+
GWHAAZE00000006	CDS	67835664	67835720	+
GWHAAZE00000006	CDS	67835799	67835885	+
GWHAAZE00000006	CDS	67836002	67836148	+
GWHAAZE00000006	CDS	67836286	67836390	+
GWHAAZE00000006	CDS	67838411	67838509	+
GWHAAZE00000006	CDS	67838700	67838849	+
GWHAAZE00000006	three_prime_UTR	67838850	67839232	+

Transcript Sequence
>GWHTAAZE022191 ATGGCGACGAGTTCCCCCAACCTAGAGTGTCGTATGTACGAAGCCAAGTTCCCAGAGGTGGACATGGCGGTGATGATTCAAGTAAAGAGCATCGGCGAGATGTGCGCCTACGTTTCCTTGCTGGAATACAACAACATCGAGGGCATGATCCTCCTTTCGGAGCTTTCTCGCCGTCGGATCCGAAGCATCAACAGTTTGATTAAGGTCGGCCGCATCGAGCCAGTGATGGTGCTTCACGTTGATGCGGAGAAAGGATATGTAAATCTCAGTAAGAGGAGAGTTTCCGAGGAGGATATACAGGTCTGTGAGGATAGGTATAATAAGAGTAAGCTTGTTCACTCGATAATGCGGCACGTTGCTGAGACTATGCAGGTGGATCTAGAGGATCTGTACGTACATGTTGGCTGGCCGTTATACCGAAAATATGGCCACGCTTTTGAGGCATTCAAGTTGATTGTAAATGATCCTGATTCCATTATTAATACCCTCACCCGTGAAGTAAAAGAGACTGGTCCTGATGGACAGGAGGTGACTAAGGTGGTTCCTGCTATCTCAGAGGAAGTTAAGGATGCTTTAGTGAAAAACATTAGGAGAAGAATGACTCCGCAACCATTGAAGATTCGGGCCGATATTGAGATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGATGCCATGCGGAAGGCTGAAGCTGCTGGCAATAAGGAATGCCCTGTCAAAATTAAGCTGGTTGCTCCTCCATCTTATGTTCTTCTTACTCATACCCTTGACAAGGAACAAGGGATCTCAGTTCTTACTAAAGCAATTGCTGCTTGCACTGAAGAAATAGAGCGCCATAAGGGGAAACTTACTGTGAAGGAGGCACCTAGAGCAGTGAGTGAAAGGGAGGATAAACTGTTTGCCGAGCAAATGGCAAAGCTAATTCAAGAAAATGAGGAGGTTAGTGGAGATGAAGATAGTGAAGAGGAGGAAGACACGGGAATGGGAGACATTGATTTGGACAAGACTACATCTGAAATCTAAGGACAACAGCGCATACCAAATCACTCAAAGAATTTGTTATCTTAGCTACATTTTTTTTTACCATTTTCCAACCTAGCATTTGAGCGGGTGTCTAAATCTGATACACAAAGTGTGAGTTAGAAAAGATTATTTTGGCATATGGCCACGTTAATCAGTTTTTTACTTGTCGATACAATGTTTTTGGCAGTTACAATGGAGAATGCTTTGCACCCCTTGCGTCTGTGTGGCCTGACGTTTGTGTTAGTGTCATTTAATTTGTGTCATAAATTGCCCGACCATTATATGGATCCGTCAAATCTGTTTCTTGTTAAATTGTATCTTATAGATCTCACAGTGTGTTTAAAACACGCAATTTTTTGTACATCAGGTCTGTGGTGTGCGCA

Network for GWHGAAZE022163

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.24	S1	19	92	2.70E-09
PF07541.13	EIF_2_alpha	130	260	3.10E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03237	EIF2S1	RNA transport	map03013
		Protein processing in endoplasmic reticulum	map04141
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Apoptosis	map04210

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.377
	SRR3591706	second leaf	21.771
	SRR3591707	mature leaf	19.003
	SRR3591708	Shoot apex	59.265
	SRR3591709	Stem	35.016
	SRR3591710	White floral bud	44.108
	SRR3591711	White flower	71.181
	SRR3591712	Green floral bud	52.876
	SRR3591713	Yellow flower	57.230
SRP173429	SRR8316895	Juvenile bud stage	41.921
	SRR8316896	Juvenile bud stage	65.418
	SRR8316897	Juvenile bud stage	28.321
	SRR8316894	Third green stage	25.663
	SRR8316900	Third green stage	84.958
	SRR8316901	Third green stage	67.073
	SRR8316898	Complete white stage	25.928
	SRR8316899	Complete white stage	76.785
	SRR8316903	Complete white stage	32.907
	SRR8316902	Silver flowering stage	30.170
	SRR8316904	Silver flowering stage	35.187
	SRR8316905	Silver flowering stage	14.944
	SRR8316906	Gold flowering stage	64.092
	SRR8316907	Gold flowering stage	65.821
	SRR8316908	Gold flowering stage	67.398
SRP132670	SRR6706286	Control	57.001
	SRR6706287	Light intensity 50%	60.514
	SRR6706288	Light intensity 20%	64.458
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.737
	CNS0095593	Slightly white alabastrum(diploid) 2	58.430
	CNS0095594	Slightly white alabastrum(diploid) 3	50.464
	CNS0095595	Whole white alabastrum(diploid) 2	42.853
	CNS0095596	Whole white alabastrum(diploid) 3	49.270
	CNS0095597	Whole white alabastrum(diploid) 4	37.942
	CNS0095598	Silvery flower (diploied) 1	43.613
	CNS0095599	Silvery flower (diploied) 2	39.348
	CNS0095600	Silvery flower (diploied) 3	50.945
	CNS0095601	Golden flower (diploid) 1	29.164
	CNS0095602	Golden flower (diploid) 2	41.645
	CNS0095603	Golden flower (diploid) 3	45.614
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.055
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.818
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.856
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.745
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.701
	CNS0095610	Silvery flower (tetraploid) 1	64.662
	CNS0095611	Silvery flower (tetraploid) 2	56.647
	CNS0095612	Silvery flower (tetraploid) 3	46.367
	CNS0095613	Golden flower (tetraploid) 1	43.758
	CNS0095614	Golden flower (tetraploid) 2	56.090
	CNS0095615	Golden flower (tetraploid) 3	35.858
CRA001975	CRR073297	Stem 1	56.661
	CRR073298	Stem 2	53.297
	CRR073299	Stem 3	64.611
	CRR073300	Leaf 1	56.654
	CRR073301	Leaf 2	59.050
	CRR073302	Leaf 3	66.361
	CRR073303	Juvenile bud 1	63.668
	CRR073304	Juvenile bud 2	58.147
	CRR073305	Juvenile bud 3	66.406
	CRR073306	Third green 1	20.104
	CRR073307	Third green 2	20.380
	CRR073308	Third green 3	23.674
	CRR073309	Second white 1	42.576
	CRR073310	Second white 2	35.551
	CRR073311	Second white 3	26.192
	CRR073312	Silver flowering 1	29.162
	CRR073313	Silver flowering 2	28.231
	CRR073314	Silver flowering 3	26.597
	CRR073315	Gold flowering 1	24.507
	CRR073316	Gold flowering 2	37.969
	CRR073317	Gold flowering 3	22.519
	CRR073318	Tawny withering 1	55.885
	CRR073319	Tawny withering 2	57.708
	CRR073320	Tawny withering 3	69.321