Gene detail

Detail information of GWHGAAZE022164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG10660.1	0	Eukaryotic translation initiation factor 2 subunit 3 [Gossypium arboreum]
COG	YP_004484975.1	5E-136	translation initiation factor 2 subunit gamma
Swissprot	tr\|Q9TJQ8\|EFTU_PROWI	1E-20	Elongation factor Tu, plastid
trEMBL	tr\|A0A0A0KMB1\|A0A0A0KMB1_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN50805.1}
TAIR10	AT1G04170.1	0	eukaryotic translation initiation factor 2 gamma subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67842582	67849073	+
GWHAAZE00000006	mRNA	67842582	67849073	+
GWHAAZE00000006	exon	67842582	67842605	+
GWHAAZE00000006	exon	67842898	67843047	+
GWHAAZE00000006	exon	67843228	67843289	+
GWHAAZE00000006	exon	67844090	67844202	+
GWHAAZE00000006	exon	67844287	67844389	+
GWHAAZE00000006	exon	67847074	67847301	+
GWHAAZE00000006	exon	67847400	67847618	+
GWHAAZE00000006	exon	67848419	67848679	+
GWHAAZE00000006	exon	67848771	67849073	+
GWHAAZE00000006	five_prime_UTR	67842582	67842605	+
GWHAAZE00000006	five_prime_UTR	67842898	67842941	+
GWHAAZE00000006	CDS	67842942	67843047	+
GWHAAZE00000006	CDS	67843228	67843289	+
GWHAAZE00000006	CDS	67844090	67844202	+
GWHAAZE00000006	CDS	67844287	67844389	+
GWHAAZE00000006	CDS	67847074	67847301	+
GWHAAZE00000006	CDS	67847400	67847618	+
GWHAAZE00000006	CDS	67848419	67848679	+
GWHAAZE00000006	CDS	67848771	67849073	+

Transcript Sequence
>GWHTAAZE022192 CCAACCGACGGCTGGTTGTCACTGATTTCGGAATTTACTTTTGTTGACGCCCCTGAAGATCAGGCAATATGGCTCGCAAAGGTTTGATGGAGCAGGATTTAAGCAAACTGGATGTTACACAACTACATCCTCTTTCGCCTGAAGTAATATCTCGTCAGGCTACGATAAACATTGGCACAATTGGTCACGTGGCACACGGAAAGTCCACAGTTGTAAAAGCTATATCCGGCGTTCAGACTGTTCGTTTTAAAAATGAGCTGGAACGTAACATCACTATTAAGCTTGGATATGCTAATGCAAAGATATACAAATGTGAAGATGAAAAGTGCCCAAGACCCATGTGCTACAAAGCATATGGAAGTGGAAAAGAAGATACTCCTCTGTGTGACGTTCCTGGGTTTGAGACCTGCAGGATGAAATTGCTGAGGCATGTATCTTTTGTTGATTGCCCAGGGCATGATATTCTCATGGCAACAATGCTTAACGGAGCAGCTATCATGGATGGGGCGTTACTTCTTATAGCTGCCAACGAAAGTTGCCCCCAGCCCCAGACTTCAGAGCATTTGGCTGCTGTTGAAATCATGCGTCTTCAGCATATAATAATTCTTCAAAATAAGGTTGATCTAATTCAGGAAAACGTAGCAATCAATCAGCATGAAGCCATTCAGAAATTTATTCAGGGAACTGTTGCTGATGGTGCACCAGTGATACCAGTTTCTGCACAACTCAAGTATAATATCGATGTTGTGTGCGAGTACATAGTGAAAAGGATTCCCATTCCGGAGAGGAACTTTATTTCTCCACCAAATATGATTGTGATCCGTTCTTTTGATGTCAATAAGCCTGGGTTTGAAGTTGACGATATTAGAGGTGGTGTTGCTGGTGGCAGCATACTCAAGGGTGTTTTGAAGGTAAATCAATTCATAGAAGTTCGACCAGGGATTGTTGTCAAAGACGAGAGTGGAAACATCAAATGCACCCCGATTTACTCTAGAATAGTTTCATTGTACGCCGAGCAAAACGAACTGCAGTTTGCTGTTCCTGGAGGCCTCATTGGGGTAGGCACAACAATGGACCCTACCTTGACACGTGCTGACCGGCTAGTGGGACAGGTTCTTGGGGAGGTTGGCTCACTTCCTGAAGTTTATGTTGAACTAGAGGTGAACTTCTTTTTGCTGCGAAGGCTGCTAGGTGTGAGGACTAAAGGCACAGAGAGGCAGGGAAAGGTGTCAAAGCTCGCAAAAGCGGAGATACTTATGTTGAACATAGGATCTATGTCAACTGGAGCTAGAGTTGTTGCTGTAAAGAATGACTTGGCGAAGCTGCAGCTGACATCACCGGTGTGCACCAGCAAGGGAGAGAAAATTGCTCTGAGCAGGCGTGTTGAGAAGCACTGGCGGCTAATCGGCTGGGGCCAGATTCAGGCAGGTCTTACACTTGAAGTGCCACCCTGTCCGATTTGA

Network for GWHGAAZE022164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	32	236	3.80E-24
PF03144.26	GTP_EFTU_D2	268	350	9.90E-10
PF09173.12	eIF2_C	362	451	1.40E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03242	EIF2S3	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.268
	SRR3591706	second leaf	48.907
	SRR3591707	mature leaf	29.112
	SRR3591708	Shoot apex	84.181
	SRR3591709	Stem	51.685
	SRR3591710	White floral bud	55.894
	SRR3591711	White flower	76.400
	SRR3591712	Green floral bud	87.584
	SRR3591713	Yellow flower	66.651
SRP173429	SRR8316895	Juvenile bud stage	55.807
	SRR8316896	Juvenile bud stage	81.753
	SRR8316897	Juvenile bud stage	39.347
	SRR8316894	Third green stage	33.703
	SRR8316900	Third green stage	103.591
	SRR8316901	Third green stage	95.717
	SRR8316898	Complete white stage	23.865
	SRR8316899	Complete white stage	85.973
	SRR8316903	Complete white stage	39.228
	SRR8316902	Silver flowering stage	25.302
	SRR8316904	Silver flowering stage	34.314
	SRR8316905	Silver flowering stage	16.236
	SRR8316906	Gold flowering stage	57.515
	SRR8316907	Gold flowering stage	54.385
	SRR8316908	Gold flowering stage	57.881
SRP132670	SRR6706286	Control	85.417
	SRR6706287	Light intensity 50%	89.050
	SRR6706288	Light intensity 20%	96.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	72.463
	CNS0095593	Slightly white alabastrum(diploid) 2	88.833
	CNS0095594	Slightly white alabastrum(diploid) 3	72.605
	CNS0095595	Whole white alabastrum(diploid) 2	74.054
	CNS0095596	Whole white alabastrum(diploid) 3	78.579
	CNS0095597	Whole white alabastrum(diploid) 4	71.608
	CNS0095598	Silvery flower (diploied) 1	46.951
	CNS0095599	Silvery flower (diploied) 2	43.671
	CNS0095600	Silvery flower (diploied) 3	62.608
	CNS0095601	Golden flower (diploid) 1	37.555
	CNS0095602	Golden flower (diploid) 2	60.870
	CNS0095603	Golden flower (diploid) 3	57.695
	CNS0095604	Slightly white alabastrum(tetraploid) 1	90.057
	CNS0095605	Slightly white alabastrum(tetraploid) 2	84.412
	CNS0095606	Slightly white alabastrum(tetraploid) 3	119.423
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.007
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.614
	CNS0095609	Whole white alabastrum(tetraploid) 3	103.840
	CNS0095610	Silvery flower (tetraploid) 1	78.205
	CNS0095611	Silvery flower (tetraploid) 2	67.692
	CNS0095612	Silvery flower (tetraploid) 3	52.957
	CNS0095613	Golden flower (tetraploid) 1	44.869
	CNS0095614	Golden flower (tetraploid) 2	66.073
	CNS0095615	Golden flower (tetraploid) 3	44.855
CRA001975	CRR073297	Stem 1	87.457
	CRR073298	Stem 2	83.276
	CRR073299	Stem 3	89.222
	CRR073300	Leaf 1	96.685
	CRR073301	Leaf 2	95.327
	CRR073302	Leaf 3	92.236
	CRR073303	Juvenile bud 1	102.962
	CRR073304	Juvenile bud 2	74.398
	CRR073305	Juvenile bud 3	110.375
	CRR073306	Third green 1	20.244
	CRR073307	Third green 2	21.226
	CRR073308	Third green 3	24.651
	CRR073309	Second white 1	33.166
	CRR073310	Second white 2	32.143
	CRR073311	Second white 3	28.182
	CRR073312	Silver flowering 1	35.885
	CRR073313	Silver flowering 2	40.262
	CRR073314	Silver flowering 3	31.433
	CRR073315	Gold flowering 1	32.719
	CRR073316	Gold flowering 2	49.194
	CRR073317	Gold flowering 3	37.059
	CRR073318	Tawny withering 1	73.925
	CRR073319	Tawny withering 2	69.930
	CRR073320	Tawny withering 3	84.764