Gene detail

Detail information of GWHGAAZE022172

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270564.1	0	PREDICTED: MATE efflux family protein 5 [Vitis vinifera]
COG	YP_003264696.1	8E-35	MATE efflux family protein
Swissprot	tr\|Q8RWF5\|MATE9_ARATH	5E-59	MATE efflux family protein 9
trEMBL	tr\|D7SYC2\|D7SYC2_VITVI	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR10	AT5G49130.1	2E-149	MATE efflux family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67976023	67977432	-
GWHAAZE00000006	mRNA	67976023	67977432	-
GWHAAZE00000006	exon	67976877	67977432	-
GWHAAZE00000006	exon	67976023	67976837	-
GWHAAZE00000006	CDS	67976877	67977432	-
GWHAAZE00000006	CDS	67976023	67976837	-

Transcript Sequence
>GWHTAAZE022200 ATGGGCTTGGTGGGCTATCTAAAAAGCATGATTTTAGTTGTCTGCATGGGACGACTTGGGAGCCTCGAGCTAGCTGGAGGCGCACTAGCCATTGGGTTCACAAACATCACTGGCTACTCGGTCTTATCAGGCCTAGCCATGGGTATGGAGCCAATCTGCAGCCAGGCCGTTGGCTCAAGAAACCTACACTTAGTTTCTCTAACTCTACAAAGAACGATCCTTATGCTACTTTTTGCATCTGTGCCCATTGGATTGTTATGGATTAACCTCGAGCCTTTGATGCTTAAGCTACACCAAGATTCAGAAATAACGCGTATTGCCAGCCTCTACTGTCGTTGTGCTGTCCCTGATCTTATTGCTAACAGCCTTCTCCATCCTCTACGTATCTACTTGCGTAGTAAAGGCACAACATGGCCATTGATGTGGTGCACATTGCTTGCAATACTTCTACATCTACCAATCACCATAGTATTGACCTTCACTCTTCATCTTGGGGTTAGGGGGGTCGCATTTTCCACCTTTCTCACCAACTTCAACAGCTTATTTTTCCTTCTAGCTAAACCATTAGTATCAAACAATTCAAACCTGAGTTTCCATTCTCCAACAAATTCACAAGGAGAGGAATGGGGAACATTACTTCGACTTGCTATACCTAGCTGTCTAGCCATTTGTTTGGAGTGGTGGTGGTACGAGTTTATGACAATTTTGGCTGGTTATCTTCAGAAACCTCAAGTTGCACTTGCAACATCAGCTATAGTTATACAAACCACCTCTCTCATGTACACATTGCCTTCGGCACTTAGTGCATCAATTTCAACCAGAGTAGGCAACGAGCTCGGAGCAGGCAGACCAGGTAAGGCCCGTTTGGCAACAGTAGTATCCATCGGTCTGGCCCTATTAATGTCAATGTTTGGCTTGTTATGGACCACGCTAGGGAGAGAAGCATGGGGGGAAATCTTCACTAGAGATAGCGAGGTTCTAGAGCTGACGATGGCCACTCTACCCATAATTGGAGTATGTGAGCTCGCCAACTGTCCACAAACTACGTGTTGTGGGGTCCTCCGAGGAACTGCAAGGCCCAGTATTGGAGCAGGTATTAACTTCTACTCATTCTACTTGGTAGGCACACCAGTTGCAATAGTTTTAGCCTTTGTTTGGAAGCTGGAGTTCCTGGGCCTCTGTTATGGGCTTTTAGCGGCTCAGGTGGCATGTGTTCTCTCAATATTAACAGTAATATACAAGACAGATTGGGAGACAGAGTCATCAAAGGCAAGAGATTTGGTGGGAGGGAGTTCTAGTGAATTTACAAATGCAGACCCAAAGGAATGTGAGGAAAGTGTAGCGTTTCTCAAAGAGGTAGCTGTTGAATAG

Network for GWHGAAZE022172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0132

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.19	MatE	8	156	4.50E-29
PF01554.19	MatE	218	380	7.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0015297	molecular_function	antiporter activity
GO:0042910	molecular_function	xenobiotic transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.677
	SRR3591706	second leaf	0.141
	SRR3591707	mature leaf	0.106
	SRR3591708	Shoot apex	0.845
	SRR3591709	Stem	13.195
	SRR3591710	White floral bud	45.837
	SRR3591711	White flower	0.481
	SRR3591712	Green floral bud	22.147
	SRR3591713	Yellow flower	0.058
SRP173429	SRR8316895	Juvenile bud stage	0.240
	SRR8316896	Juvenile bud stage	0.048
	SRR8316897	Juvenile bud stage	0.078
	SRR8316894	Third green stage	0.088
	SRR8316900	Third green stage	1.101
	SRR8316901	Third green stage	2.800
	SRR8316898	Complete white stage	105.019
	SRR8316899	Complete white stage	156.518
	SRR8316903	Complete white stage	147.236
	SRR8316902	Silver flowering stage	0.234
	SRR8316904	Silver flowering stage	0.510
	SRR8316905	Silver flowering stage	0.215
	SRR8316906	Gold flowering stage	0.096
	SRR8316907	Gold flowering stage	0.116
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.820
	SRR6706287	Light intensity 50%	26.087
	SRR6706288	Light intensity 20%	6.516
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.324
	CNS0095593	Slightly white alabastrum(diploid) 2	0.593
	CNS0095594	Slightly white alabastrum(diploid) 3	0.222
	CNS0095595	Whole white alabastrum(diploid) 2	0.881
	CNS0095596	Whole white alabastrum(diploid) 3	1.108
	CNS0095597	Whole white alabastrum(diploid) 4	1.156
	CNS0095598	Silvery flower (diploied) 1	0.697
	CNS0095599	Silvery flower (diploied) 2	2.109
	CNS0095600	Silvery flower (diploied) 3	3.955
	CNS0095601	Golden flower (diploid) 1	0.435
	CNS0095602	Golden flower (diploid) 2	0.301
	CNS0095603	Golden flower (diploid) 3	0.152
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.693
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.434
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.398
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.552
	CNS0095610	Silvery flower (tetraploid) 1	1.982
	CNS0095611	Silvery flower (tetraploid) 2	1.171
	CNS0095612	Silvery flower (tetraploid) 3	2.841
	CNS0095613	Golden flower (tetraploid) 1	0.143
	CNS0095614	Golden flower (tetraploid) 2	0.223
	CNS0095615	Golden flower (tetraploid) 3	0.450
CRA001975	CRR073297	Stem 1	0.296
	CRR073298	Stem 2	0.088
	CRR073299	Stem 3	0.118
	CRR073300	Leaf 1	3.511
	CRR073301	Leaf 2	1.953
	CRR073302	Leaf 3	3.243
	CRR073303	Juvenile bud 1	12.595
	CRR073304	Juvenile bud 2	518.361
	CRR073305	Juvenile bud 3	18.575
	CRR073306	Third green 1	47.096
	CRR073307	Third green 2	50.165
	CRR073308	Third green 3	33.065
	CRR073309	Second white 1	0.096
	CRR073310	Second white 2	0.262
	CRR073311	Second white 3	0.156
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000