Gene detail

Detail information of GWHGAAZE022173

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259494.1	7.1639E-177	PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial isoform X2 [Nelumbo nucifera]
COG	YP_003913632.1	4E-78	catalytic domain of components of various dehydrogenase complexes
Swissprot	tr\|Q9M7Z1\|ODB2_ARATH	5E-146	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|D7SYC1\|D7SYC1_VITVI	2E-172	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22978.3}
TAIR10	AT3G06850.2	1E-119	2-oxoacid dehydrogenases acyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68000930	68003884	+
GWHAAZE00000006	mRNA	68000930	68003884	+
GWHAAZE00000006	exon	68000930	68001321	+
GWHAAZE00000006	exon	68001902	68002149	+
GWHAAZE00000006	exon	68002695	68002783	+
GWHAAZE00000006	exon	68002927	68003154	+
GWHAAZE00000006	exon	68003327	68003884	+
GWHAAZE00000006	CDS	68000930	68001321	+
GWHAAZE00000006	CDS	68001902	68002149	+
GWHAAZE00000006	CDS	68002695	68002783	+
GWHAAZE00000006	CDS	68002927	68003154	+
GWHAAZE00000006	CDS	68003327	68003440	+
GWHAAZE00000006	three_prime_UTR	68003441	68003884	+

Transcript Sequence
>GWHTAAZE022201 ATGGTTGTTGGTGAATCTCCTCTTCCAACTCAAACAACTGATAGTCGGGAAAACTCAAATTCTTTGGTTTCCGCTATATGCAATTCTTCAGATGATGAAGAAGTTTCAGTGCATGGAAAGACTAAAAGAAGTGGAGTTTTATCCACACCGGCTGTTCGTAACCTTGCAAAGCAATATGGTGTCGATATAAATGATGTCTGCGGAACTGGTAAGGATGGAAGGGTGTTAAAGGAAGATGTCCTCAAATATGCTTCCCCCAAAGGAATTTTAGAAGATAGATCATCTTCCTTGAATCTTACTACAATTGAACAAATGCTGGGAGGAGGAGAAAAATACCCTGATGTGCCAGCTGTACATGGATGGGATTATGAAGATAAAACATTAGTACTGAGGGGATACCAGCGTGCAATGGTTAAGTCAATGACCTTAGCGGCAAAAATTCCACATTTTCATTACGTAGAAGAGCTAAACTGTGATGCACTTGTGGAGCTTAAAGCATCTTTCCATAAGGAGAATTCTGATCCAAATGTCAAGCACACTTTCCTTCCGATCTTGATAAAGTCCCTTTCGATGGCATTGAGTAAACATCCCTTGCTAAACAGTTGCTTCAATGAGGAATCCCATGAGGTCACCCTTAAAGGCTCGCACAATATTGGAGTTGCAATGGCTACACCAAATGGCTTAGTTGTACCTACCATCAAGAAGGTCCAGTCACTTTCTATCTTGGAGATAACAAAGGAACTGTCAAGGCTACAACAGTTGGCTTTAAATAACAAGCTTGGTCCTGATGAAATATCTGGTGGAACTATAACTTTGAGCAATATTGGAGCAATTGGTGGTAAGTTTGGGTCGCCCCTCGTTAATGTTCCCGAAGTTTGCATCATTGCAATTGGCCGAATCCAGAAAGTTGCTCGGTTTGATGGCAATGAAAACGTGTACCCTGTGTCAATCATGACTGTAAATATTGGTGCTGATCATCGAGTTTTGGATGGTGCAATGGTTGCAAGATTCTGCAACGAGTGGAAGCTATTTATCGAAAAACCGGAGTTGCTGATGTTACATACCCGATGACCCTTCACTAACTTATGAAAAACATGGCGGTCTGTTTTTCTTCCCCTTCCTAGAGTGGCCAAAAGCCAAAAGATATATTGATAGACTTTGTAACAACGTGGACATAAATGAAAGTTTGAGCATGAAGTACAACAGGCCTAATGAACTGCTAGGGTTTATCTGGATTCTCGTGCCTCGGATGCATGAGATTGGTGTTTTTTAGCAGCAGCAACATGTTGGTCTTGGAATCATGTAACTAGACTTGCCAATTCCAGGGTGTCTCCTTTTTCTGCTGATGGAATAAAACCCGAATTTCGGAATGTTTACGAATTAGCATTTGTTGCTCGACAAGAGCCAATAAAATGTTAAATGGCCGAAATTTGAAATATTTTAGTGGATTAACTTTCAATGGAGCGTTCTTTCACTAGAGAGCAAAGCATTTTTAAATAAAAATTAATGGGCACA

Network for GWHGAAZE022173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02817.18	E3_binding	46	81	4.90E-15
PF00198.24	2-oxoacid_dh	125	353	1.20E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09699	DBT, bkdB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.154
	SRR3591706	second leaf	4.542
	SRR3591707	mature leaf	4.649
	SRR3591708	Shoot apex	11.091
	SRR3591709	Stem	15.265
	SRR3591710	White floral bud	52.925
	SRR3591711	White flower	21.025
	SRR3591712	Green floral bud	33.848
	SRR3591713	Yellow flower	17.985
SRP173429	SRR8316895	Juvenile bud stage	12.573
	SRR8316896	Juvenile bud stage	22.457
	SRR8316897	Juvenile bud stage	10.300
	SRR8316894	Third green stage	10.096
	SRR8316900	Third green stage	53.408
	SRR8316901	Third green stage	50.043
	SRR8316898	Complete white stage	37.473
	SRR8316899	Complete white stage	75.273
	SRR8316903	Complete white stage	51.509
	SRR8316902	Silver flowering stage	15.203
	SRR8316904	Silver flowering stage	20.630
	SRR8316905	Silver flowering stage	9.751
	SRR8316906	Gold flowering stage	21.517
	SRR8316907	Gold flowering stage	23.895
	SRR8316908	Gold flowering stage	23.817
SRP132670	SRR6706286	Control	13.990
	SRR6706287	Light intensity 50%	15.765
	SRR6706288	Light intensity 20%	18.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.578
	CNS0095593	Slightly white alabastrum(diploid) 2	28.418
	CNS0095594	Slightly white alabastrum(diploid) 3	31.070
	CNS0095595	Whole white alabastrum(diploid) 2	28.598
	CNS0095596	Whole white alabastrum(diploid) 3	34.117
	CNS0095597	Whole white alabastrum(diploid) 4	26.871
	CNS0095598	Silvery flower (diploied) 1	25.180
	CNS0095599	Silvery flower (diploied) 2	24.374
	CNS0095600	Silvery flower (diploied) 3	51.092
	CNS0095601	Golden flower (diploid) 1	17.965
	CNS0095602	Golden flower (diploid) 2	28.835
	CNS0095603	Golden flower (diploid) 3	29.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.327
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.646
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.011
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.754
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.619
	CNS0095610	Silvery flower (tetraploid) 1	37.356
	CNS0095611	Silvery flower (tetraploid) 2	56.403
	CNS0095612	Silvery flower (tetraploid) 3	49.481
	CNS0095613	Golden flower (tetraploid) 1	25.298
	CNS0095614	Golden flower (tetraploid) 2	30.558
	CNS0095615	Golden flower (tetraploid) 3	28.513
CRA001975	CRR073297	Stem 1	14.144
	CRR073298	Stem 2	14.369
	CRR073299	Stem 3	10.438
	CRR073300	Leaf 1	28.625
	CRR073301	Leaf 2	26.249
	CRR073302	Leaf 3	29.071
	CRR073303	Juvenile bud 1	39.517
	CRR073304	Juvenile bud 2	39.933
	CRR073305	Juvenile bud 3	50.631
	CRR073306	Third green 1	29.442
	CRR073307	Third green 2	20.638
	CRR073308	Third green 3	27.660
	CRR073309	Second white 1	26.484
	CRR073310	Second white 2	18.128
	CRR073311	Second white 3	14.041
	CRR073312	Silver flowering 1	8.174
	CRR073313	Silver flowering 2	8.003
	CRR073314	Silver flowering 3	9.095
	CRR073315	Gold flowering 1	3.340
	CRR073316	Gold flowering 2	5.128
	CRR073317	Gold flowering 3	3.724
	CRR073318	Tawny withering 1	6.187
	CRR073319	Tawny withering 2	7.681
	CRR073320	Tawny withering 3	9.514