Detail information of GWHGAAZE022179


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009595337.19.02681E-55PREDICTED: RING-H2 finger protein ATL2-like [Nicotiana tomentosiformis]
Swissprottr|Q8L9T5|ATL2_ARATH2E-50RING-H2 finger protein ATL2
trEMBLtr|A0A067JV40|A0A067JV40_JATCU2E-53Uncharacterized protein {ECO:0000313|EMBL:KDP27831.1}
TAIR10AT3G16720.16E-43TOXICOS EN LEVADURA 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6806680168067481+
GWHAAZE00000006mRNA6806680168067481+
GWHAAZE00000006exon6806680168067481+
GWHAAZE00000006CDS6806680168067481+
Transcript Sequence

Network for GWHGAAZE022179

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2631069.00E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf91.678
SRR3591706second leaf19.857
SRR3591707mature leaf6.073
SRR3591708Shoot apex66.839
SRR3591709Stem75.091
SRR3591710White floral bud19.414
SRR3591711White flower24.875
SRR3591712Green floral bud27.589
SRR3591713Yellow flower1.127
SRP173429 SRR8316895Juvenile bud stage 152.684
SRR8316896Juvenile bud stage 119.849
SRR8316897Juvenile bud stage 62.535
SRR8316894Third green stage 52.359
SRR8316900Third green stage 96.881
SRR8316901Third green stage 129.641
SRR8316898Complete white stage 1.047
SRR8316899Complete white stage 148.167
SRR8316903Complete white stage 3.164
SRR8316902Silver flowering stage1.521
SRR8316904Silver flowering stage0.404
SRR8316905Silver flowering stage0.595
SRR8316906Gold flowering stage 1.053
SRR8316907Gold flowering stage 2.468
SRR8316908Gold flowering stage 0.508
SRP132670SRR6706286Control14.720
SRR6706287Light intensity 50%18.797
SRR6706288Light intensity 20%17.093
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.574
CNS0095593Slightly white alabastrum(diploid) 2141.181
CNS0095594Slightly white alabastrum(diploid) 3109.802
CNS0095595Whole white alabastrum(diploid) 263.600
CNS0095596Whole white alabastrum(diploid) 324.077
CNS0095597Whole white alabastrum(diploid) 459.289
CNS0095598Silvery flower (diploied) 1202.168
CNS0095599Silvery flower (diploied) 2164.171
CNS0095600Silvery flower (diploied) 351.725
CNS0095601Golden flower (diploid) 1175.202
CNS0095602Golden flower (diploid) 268.396
CNS0095603Golden flower (diploid) 368.642
CNS0095604Slightly white alabastrum(tetraploid) 16.361
CNS0095605Slightly white alabastrum(tetraploid) 25.837
CNS0095606Slightly white alabastrum(tetraploid) 36.734
CNS0095607Whole white alabastrum(tetraploid) 14.605
CNS0095608Whole white alabastrum(tetraploid) 23.678
CNS0095609Whole white alabastrum(tetraploid) 34.780
CNS0095610Silvery flower (tetraploid) 10.885
CNS0095611Silvery flower (tetraploid) 21.308
CNS0095612Silvery flower (tetraploid) 312.124
CNS0095613Golden flower (tetraploid) 10.062
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.181
CRA001975CRR073297Stem 1212.264
CRR073298Stem 2273.729
CRR073299Stem 3420.510
CRR073300Leaf 1472.358
CRR073301Leaf 2626.404
CRR073302Leaf 3469.169
CRR073303Juvenile bud 1412.699
CRR073304Juvenile bud 2337.628
CRR073305Juvenile bud 3810.366
CRR073306Third green 18.381
CRR073307Third green 212.788
CRR073308Third green 311.778
CRR073309Second white 10.984
CRR073310Second white 20.884
CRR073311Second white 32.366
CRR073312Silver flowering 16.661
CRR073313Silver flowering 212.105
CRR073314Silver flowering 36.957
CRR073315Gold flowering 1123.298
CRR073316Gold flowering 2154.825
CRR073317Gold flowering 3194.169
CRR073318Tawny withering 1113.312
CRR073319Tawny withering 2125.958
CRR073320Tawny withering 3224.304