Detail information of GWHGAAZE022181


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009615584.11.0668E-160PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]
COGYP_006407803.12E-59pectin methylesterase
Swissprottr|Q9FJ21|PME58_ARATH1E-138Pectinesterase 58 (Precursor)
trEMBLtr|A0A068TS15|A0A068TS15_COFCA3E-160Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT5G49180.19E-115Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6808299068084160+
GWHAAZE00000006mRNA6808299068084160+
GWHAAZE00000006exon6808299068083371+
GWHAAZE00000006exon6808346068083824+
GWHAAZE00000006exon6808385568084160+
GWHAAZE00000006CDS6808299068083371+
GWHAAZE00000006CDS6808346068083824+
GWHAAZE00000006CDS6808385568084160+
Transcript Sequence

Network for GWHGAAZE022181

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01095.20Pectinesterase473324.20E-130
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0030599molecular_functionpectinesterase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE022181.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302004006008001000120014001600Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.695
SRR3591706second leaf0.000
SRR3591707mature leaf0.297
SRR3591708Shoot apex0.735
SRR3591709Stem6.968
SRR3591710White floral bud744.509
SRR3591711White flower36.147
SRR3591712Green floral bud769.143
SRR3591713Yellow flower24.045
SRP173429 SRR8316895Juvenile bud stage 41.479
SRR8316896Juvenile bud stage 203.536
SRR8316897Juvenile bud stage 98.753
SRR8316894Third green stage 86.483
SRR8316900Third green stage 473.481
SRR8316901Third green stage 509.239
SRR8316898Complete white stage 0.498
SRR8316899Complete white stage 3.717
SRR8316903Complete white stage 0.804
SRR8316902Silver flowering stage7.459
SRR8316904Silver flowering stage12.808
SRR8316905Silver flowering stage4.886
SRR8316906Gold flowering stage 2.331
SRR8316907Gold flowering stage 1.052
SRR8316908Gold flowering stage 0.938
SRP132670SRR6706286Control270.809
SRR6706287Light intensity 50%267.784
SRR6706288Light intensity 20%239.899
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1578.479
CNS0095593Slightly white alabastrum(diploid) 2479.071
CNS0095594Slightly white alabastrum(diploid) 3735.870
CNS0095595Whole white alabastrum(diploid) 21148.171
CNS0095596Whole white alabastrum(diploid) 31339.426
CNS0095597Whole white alabastrum(diploid) 41512.526
CNS0095598Silvery flower (diploied) 137.031
CNS0095599Silvery flower (diploied) 2135.564
CNS0095600Silvery flower (diploied) 326.139
CNS0095601Golden flower (diploid) 139.814
CNS0095602Golden flower (diploid) 223.425
CNS0095603Golden flower (diploid) 321.397
CNS0095604Slightly white alabastrum(tetraploid) 1663.836
CNS0095605Slightly white alabastrum(tetraploid) 2805.498
CNS0095606Slightly white alabastrum(tetraploid) 30.687
CNS0095607Whole white alabastrum(tetraploid) 11433.087
CNS0095608Whole white alabastrum(tetraploid) 21461.636
CNS0095609Whole white alabastrum(tetraploid) 3638.526
CNS0095610Silvery flower (tetraploid) 114.646
CNS0095611Silvery flower (tetraploid) 264.423
CNS0095612Silvery flower (tetraploid) 3145.486
CNS0095613Golden flower (tetraploid) 129.083
CNS0095614Golden flower (tetraploid) 25.975
CNS0095615Golden flower (tetraploid) 375.014
CRA001975CRR073297Stem 190.988
CRR073298Stem 2118.677
CRR073299Stem 352.306
CRR073300Leaf 1427.640
CRR073301Leaf 2306.435
CRR073302Leaf 3157.735
CRR073303Juvenile bud 1297.166
CRR073304Juvenile bud 2208.694
CRR073305Juvenile bud 336.765
CRR073306Third green 1220.028
CRR073307Third green 2266.861
CRR073308Third green 3223.566
CRR073309Second white 115.349
CRR073310Second white 232.363
CRR073311Second white 334.736
CRR073312Silver flowering 1171.460
CRR073313Silver flowering 2164.673
CRR073314Silver flowering 392.978
CRR073315Gold flowering 1177.515
CRR073316Gold flowering 238.377
CRR073317Gold flowering 399.471
CRR073318Tawny withering 1161.266
CRR073319Tawny withering 2144.242
CRR073320Tawny withering 3137.428