Detail information of GWHGAAZE022182


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98832.10unnamed protein product [Coffea canephora]
COGYP_006407803.13E-60pectin methylesterase
Swissprottr|Q8GX86|PME21_ARATH0Pectinesterase 21
trEMBLtr|A0A068TS15|A0A068TS15_COFCA0Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT3G05610.15E-165Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6809281568094611-
GWHAAZE00000006mRNA6809281568094611-
GWHAAZE00000006exon6809281568093515-
GWHAAZE00000006exon6809360368094611-
GWHAAZE00000006CDS6809360368094611-
GWHAAZE00000006CDS6809281568093515-
Transcript Sequence

Network for GWHGAAZE022182

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.16PMEI521995.70E-27
PF01095.20Pectinesterase2565513.20E-133
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0004857molecular_functionenzyme inhibitor activity
GO:0030599molecular_functionpectinesterase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.923
SRR3591706second leaf0.119
SRR3591707mature leaf0.348
SRR3591708Shoot apex2.420
SRR3591709Stem12.865
SRR3591710White floral bud1463.020
SRR3591711White flower73.362
SRR3591712Green floral bud1524.526
SRR3591713Yellow flower37.042
SRP173429 SRR8316895Juvenile bud stage 209.654
SRR8316896Juvenile bud stage 598.125
SRR8316897Juvenile bud stage 239.576
SRR8316894Third green stage 205.062
SRR8316900Third green stage 870.111
SRR8316901Third green stage 995.700
SRR8316898Complete white stage 0.636
SRR8316899Complete white stage 6.098
SRR8316903Complete white stage 1.087
SRR8316902Silver flowering stage13.017
SRR8316904Silver flowering stage22.823
SRR8316905Silver flowering stage7.215
SRR8316906Gold flowering stage 4.042
SRR8316907Gold flowering stage 1.067
SRR8316908Gold flowering stage 1.619
SRP132670SRR6706286Control595.399
SRR6706287Light intensity 50%560.988
SRR6706288Light intensity 20%497.472
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11196.643
CNS0095593Slightly white alabastrum(diploid) 2978.139
CNS0095594Slightly white alabastrum(diploid) 31490.158
CNS0095595Whole white alabastrum(diploid) 22106.217
CNS0095596Whole white alabastrum(diploid) 32515.186
CNS0095597Whole white alabastrum(diploid) 42733.670
CNS0095598Silvery flower (diploied) 160.076
CNS0095599Silvery flower (diploied) 2207.279
CNS0095600Silvery flower (diploied) 350.654
CNS0095601Golden flower (diploid) 161.489
CNS0095602Golden flower (diploid) 236.465
CNS0095603Golden flower (diploid) 340.316
CNS0095604Slightly white alabastrum(tetraploid) 11770.069
CNS0095605Slightly white alabastrum(tetraploid) 22094.614
CNS0095606Slightly white alabastrum(tetraploid) 32.012
CNS0095607Whole white alabastrum(tetraploid) 13202.853
CNS0095608Whole white alabastrum(tetraploid) 23114.921
CNS0095609Whole white alabastrum(tetraploid) 31514.235
CNS0095610Silvery flower (tetraploid) 127.573
CNS0095611Silvery flower (tetraploid) 2132.114
CNS0095612Silvery flower (tetraploid) 3303.428
CNS0095613Golden flower (tetraploid) 144.030
CNS0095614Golden flower (tetraploid) 28.783
CNS0095615Golden flower (tetraploid) 3164.490
CRA001975CRR073297Stem 1328.263
CRR073298Stem 2330.182
CRR073299Stem 3167.727
CRR073300Leaf 11023.422
CRR073301Leaf 2731.634
CRR073302Leaf 3375.287
CRR073303Juvenile bud 1679.587
CRR073304Juvenile bud 2423.679
CRR073305Juvenile bud 385.723
CRR073306Third green 1464.690
CRR073307Third green 2587.231
CRR073308Third green 3463.820
CRR073309Second white 130.215
CRR073310Second white 283.654
CRR073311Second white 396.907
CRR073312Silver flowering 1489.107
CRR073313Silver flowering 2515.670
CRR073314Silver flowering 3284.963
CRR073315Gold flowering 1427.768
CRR073316Gold flowering 2103.303
CRR073317Gold flowering 3211.904
CRR073318Tawny withering 1399.996
CRR073319Tawny withering 2362.014
CRR073320Tawny withering 3315.472