Detail information of GWHGAAZE022183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002512459.10Pectinesterase precursor, putative [Ricinus communis]
COGYP_006407803.12E-57pectin methylesterase
Swissprottr|Q9FJ21|PME58_ARATH2E-171Pectinesterase 58 (Precursor)
trEMBLtr|B9RFE0|B9RFE0_RICCO0Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT5G49180.11E-135Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6809947268102369-
GWHAAZE00000006mRNA6809947268102369-
GWHAAZE00000006exon6809947268100187-
GWHAAZE00000006exon6810079268101302-
GWHAAZE00000006exon6810190868102369-
GWHAAZE00000006CDS6810190868102369-
GWHAAZE00000006CDS6810079268101302-
GWHAAZE00000006CDS6809947268100187-
Transcript Sequence

Network for GWHGAAZE022183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.16PMEI521743.90E-13
PF01095.20Pectinesterase2435447.90E-124
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0030599molecular_functionpectinesterase activity
GO:0004857molecular_functionenzyme inhibitor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.239
SRR3591706second leaf0.113
SRR3591707mature leaf0.129
SRR3591708Shoot apex0.217
SRR3591709Stem3.005
SRR3591710White floral bud311.335
SRR3591711White flower15.386
SRR3591712Green floral bud313.671
SRR3591713Yellow flower10.411
SRP173429 SRR8316895Juvenile bud stage 19.116
SRR8316896Juvenile bud stage 100.056
SRR8316897Juvenile bud stage 41.209
SRR8316894Third green stage 46.755
SRR8316900Third green stage 204.598
SRR8316901Third green stage 221.805
SRR8316898Complete white stage 0.040
SRR8316899Complete white stage 1.337
SRR8316903Complete white stage 0.482
SRR8316902Silver flowering stage3.172
SRR8316904Silver flowering stage6.874
SRR8316905Silver flowering stage1.832
SRR8316906Gold flowering stage 1.387
SRR8316907Gold flowering stage 0.427
SRR8316908Gold flowering stage 0.529
SRP132670SRR6706286Control137.397
SRR6706287Light intensity 50%130.342
SRR6706288Light intensity 20%118.884
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1243.238
CNS0095593Slightly white alabastrum(diploid) 2198.509
CNS0095594Slightly white alabastrum(diploid) 3305.768
CNS0095595Whole white alabastrum(diploid) 2487.039
CNS0095596Whole white alabastrum(diploid) 3603.257
CNS0095597Whole white alabastrum(diploid) 4687.481
CNS0095598Silvery flower (diploied) 111.652
CNS0095599Silvery flower (diploied) 246.330
CNS0095600Silvery flower (diploied) 38.297
CNS0095601Golden flower (diploid) 115.498
CNS0095602Golden flower (diploid) 27.673
CNS0095603Golden flower (diploid) 37.222
CNS0095604Slightly white alabastrum(tetraploid) 1509.846
CNS0095605Slightly white alabastrum(tetraploid) 2597.387
CNS0095606Slightly white alabastrum(tetraploid) 30.530
CNS0095607Whole white alabastrum(tetraploid) 1839.177
CNS0095608Whole white alabastrum(tetraploid) 2859.130
CNS0095609Whole white alabastrum(tetraploid) 3415.300
CNS0095610Silvery flower (tetraploid) 17.628
CNS0095611Silvery flower (tetraploid) 226.084
CNS0095612Silvery flower (tetraploid) 374.286
CNS0095613Golden flower (tetraploid) 19.963
CNS0095614Golden flower (tetraploid) 21.843
CNS0095615Golden flower (tetraploid) 331.656
CRA001975CRR073297Stem 154.910
CRR073298Stem 265.674
CRR073299Stem 330.430
CRR073300Leaf 1262.343
CRR073301Leaf 2186.607
CRR073302Leaf 398.725
CRR073303Juvenile bud 1161.003
CRR073304Juvenile bud 290.334
CRR073305Juvenile bud 315.373
CRR073306Third green 161.974
CRR073307Third green 271.323
CRR073308Third green 364.187
CRR073309Second white 11.952
CRR073310Second white 214.023
CRR073311Second white 315.604
CRR073312Silver flowering 171.926
CRR073313Silver flowering 268.533
CRR073314Silver flowering 337.524
CRR073315Gold flowering 164.025
CRR073316Gold flowering 222.918
CRR073317Gold flowering 37.409
CRR073318Tawny withering 171.903
CRR073319Tawny withering 264.464
CRR073320Tawny withering 369.288