Gene detail

Detail information of GWHGAAZE022202

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035717.1	7.486E-47	GATA transcription factor 15, putative [Theobroma cacao]
Swissprot	tr\|Q8LG10\|GAT15_ARATH	3E-37	GATA transcription factor 15
trEMBL	tr\|A0A061EPR1\|A0A061EPR1_THECC	3E-47	GATA transcription factor 15, putative {ECO:0000313\|EMBL:EOY06643.1}
TAIR10	AT3G06740.1	5E-25	GATA transcription factor 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68444738	68445662	-
GWHAAZE00000006	mRNA	68444738	68445662	-
GWHAAZE00000006	exon	68445642	68445662	-
GWHAAZE00000006	exon	68445337	68445504	-
GWHAAZE00000006	exon	68444738	68445245	-
GWHAAZE00000006	CDS	68445642	68445662	-
GWHAAZE00000006	CDS	68445337	68445504	-
GWHAAZE00000006	CDS	68444904	68445245	-
GWHAAZE00000006	three_prime_UTR	68444738	68444903	-

Transcript Sequence
>GWHTAAZE022230 ATGATGGATCTGAGTTGCAAAGGATCGGAATCTGAAGAAGAAATGAGTAGCAATAATAGCAAATCCCCAGATAGGGTTTCTTTATCTGAAGATGATGATGATGATGATGATCAGATTAAGATTAAGAAGTGTGCTGATTGTGGTACCTCTAAAACCCCTCTGTGGAGAAGTGGCCCTGCTGGTCCTAAGTCTTTGTGTAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGAACGATCATGGGTGTCAACAAAGAAGACAAGAAGAAATCAAAAAAAATCATCAACAACAAGGATAATAATGAGAGTGGGAAGAAATTTGGGGATAAGTTGAAGAGAAGGCTGATGGCAATTGGGAGAGAAATGGTGATGCAAAGACCTAGATCCAGATCTACTACATCAATGGCTGCAAGGAGATCAAAACAGAGTTGTACTGCTGCTGCTGCTGCTACTACTAATAGTAATACTGGGGAAGAAGAACAAGCTGCTTTCTTATTGATGGCTTTATCATGTGGATCTTTTTATGCTTAATTACTAGTACTAGTGGTAGTAATAATAATAATTTTAGCTTTTTTAGGACTTCTACTGTTTTAGGAAGTGCGAGAATGATATCTGAGAATGTCAATTTTTATTAAATTGTAAGCTTCCTTCTGGTTTGTTTCTATTCTAAGTGGAAATGGAAATTGTATTTTGGAAA

Network for GWHGAAZE022202

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.28	GATA	44	78	6.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.687
	SRR3591706	second leaf	11.389
	SRR3591707	mature leaf	4.297
	SRR3591708	Shoot apex	24.951
	SRR3591709	Stem	9.636
	SRR3591710	White floral bud	5.336
	SRR3591711	White flower	1.347
	SRR3591712	Green floral bud	18.606
	SRR3591713	Yellow flower	0.247
SRP173429	SRR8316895	Juvenile bud stage	15.276
	SRR8316896	Juvenile bud stage	16.725
	SRR8316897	Juvenile bud stage	6.921
	SRR8316894	Third green stage	9.289
	SRR8316900	Third green stage	29.602
	SRR8316901	Third green stage	31.056
	SRR8316898	Complete white stage	6.419
	SRR8316899	Complete white stage	39.153
	SRR8316903	Complete white stage	10.857
	SRR8316902	Silver flowering stage	1.400
	SRR8316904	Silver flowering stage	0.753
	SRR8316905	Silver flowering stage	0.600
	SRR8316906	Gold flowering stage	1.343
	SRR8316907	Gold flowering stage	0.225
	SRR8316908	Gold flowering stage	1.036
SRP132670	SRR6706286	Control	21.485
	SRR6706287	Light intensity 50%	24.717
	SRR6706288	Light intensity 20%	28.431
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.951
	CNS0095593	Slightly white alabastrum(diploid) 2	28.427
	CNS0095594	Slightly white alabastrum(diploid) 3	18.319
	CNS0095595	Whole white alabastrum(diploid) 2	19.275
	CNS0095596	Whole white alabastrum(diploid) 3	21.480
	CNS0095597	Whole white alabastrum(diploid) 4	21.908
	CNS0095598	Silvery flower (diploied) 1	9.762
	CNS0095599	Silvery flower (diploied) 2	5.976
	CNS0095600	Silvery flower (diploied) 3	5.884
	CNS0095601	Golden flower (diploid) 1	5.938
	CNS0095602	Golden flower (diploid) 2	3.804
	CNS0095603	Golden flower (diploid) 3	3.354
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.459
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.225
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.967
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.661
	CNS0095610	Silvery flower (tetraploid) 1	9.415
	CNS0095611	Silvery flower (tetraploid) 2	8.375
	CNS0095612	Silvery flower (tetraploid) 3	3.635
	CNS0095613	Golden flower (tetraploid) 1	1.057
	CNS0095614	Golden flower (tetraploid) 2	3.715
	CNS0095615	Golden flower (tetraploid) 3	0.903
CRA001975	CRR073297	Stem 1	11.750
	CRR073298	Stem 2	11.957
	CRR073299	Stem 3	7.426
	CRR073300	Leaf 1	16.318
	CRR073301	Leaf 2	13.538
	CRR073302	Leaf 3	4.548
	CRR073303	Juvenile bud 1	10.583
	CRR073304	Juvenile bud 2	9.825
	CRR073305	Juvenile bud 3	8.884
	CRR073306	Third green 1	0.184
	CRR073307	Third green 2	0.526
	CRR073308	Third green 3	0.366
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.121
	CRR073313	Silver flowering 2	0.029
	CRR073314	Silver flowering 3	0.073
	CRR073315	Gold flowering 1	1.070
	CRR073316	Gold flowering 2	0.559
	CRR073317	Gold flowering 3	1.656
	CRR073318	Tawny withering 1	9.930
	CRR073319	Tawny withering 2	11.706
	CRR073320	Tawny withering 3	10.685