Gene detail

Detail information of GWHGAAZE022218

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259348.1	2.5073E-176	PREDICTED: putative beta-D-xylosidase [Nelumbo nucifera]
COG	YP_004464029.1	7E-73	glycoside hydrolase
Swissprot	tr\|Q9FGY1\|BXL1_ARATH	8E-174	Beta-D-xylosidase 1 (Precursor)
trEMBL	tr\|B9RZM5\|B9RZM5_RICCO	3E-176	Periplasmic beta-glucosidase, putative {ECO:0000313\|EMBL:EEF43058.1}
TAIR10	AT5G49360.1	2E-143	beta-xylosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68795345	68801277	-
GWHAAZE00000006	mRNA	68795345	68801277	-
GWHAAZE00000006	exon	68800867	68801277	-
GWHAAZE00000006	exon	68797086	68797364	-
GWHAAZE00000006	exon	68795554	68795723	-
GWHAAZE00000006	exon	68795345	68795447	-
GWHAAZE00000006	CDS	68800867	68801277	-
GWHAAZE00000006	CDS	68797086	68797364	-
GWHAAZE00000006	CDS	68795554	68795723	-
GWHAAZE00000006	CDS	68795345	68795447	-

Transcript Sequence
>GWHTAAZE022246 ATGGCTCCAAATTCACATATGACAACCTTCTCCTGTCTCTTCATTCTCACCCTTCTCTGTGTATGTGTTCACACCGGAGACTCCCGTCCACCCTTTGCATGTGACCCCGCAAATGCACAGACCAAAAACTTGCGCTTCTGCAAAACTTCCCTTCACATTAAAGACAGGGTAAGGGACTTGATCGGACGGTTGACATTGAAGGAGAAGATTGGTCTATTGGTGAACAATGCCGCTGCAGTACCCAGGCTGGGTATCCAAAGGTACGAGTGGTGGTCGGAGGCACTTCACGGCGTTTCAAGTACCGGTAACGGCGTTAAGTTCGGTGGGGCCTACCCTGGGGCCACTAGCTTCCCTCAAGTCATCACCACCGTTGCTTCCTTCAATGCCTCTTTGTGGGAACTAATTGGACGGGCGGTATCTGACGAAGCAAGAGCAATGTATAACGGAGGAGTCGCTGGTTTAACATATTGGAGTCCAAACGTAAATATATTTAGAGACCCGAGATGGGGTAGGGGACAAGAAACTCCAGGCGAAGATCCTATTATGGCTGCCAAGTACGCAACAAAATATGTCCGAGGCTTACAGGGCACTGTTGGAAAACGATTAAAAGTTGCTGCTTGTTGTAAACATTACACTGCTTACGATCTTGATAATTGGAACCACGTAGATCGATTCCATTTCAATGCCAAGGTGAGTGAACAGGACTTGGCGGATACATATGATGTACCTTTCAAGGCATGTGTGAAGGAAGGGAAAGTTGCAAGTGTAATGTGCTCATACAATCAAGTCAATGGAAAGCCCACGTGTGCTGATCCTAGTCTCCTCCGGAAAACAATTCGCGGCGATTGGCAACTTAATGGATATATCGTGTCTGACTGTGACTCTGTTGAGGCTTTATATAAACAACAACATTACACTGACACACCTGAAGATGCTGTTGTGGCCACCATCAAGGCAGGCTAG

Network for GWHGAAZE022218

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	113	320	2.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.374
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.306
	SRR3591709	Stem	5.490
	SRR3591710	White floral bud	25.026
	SRR3591711	White flower	20.089
	SRR3591712	Green floral bud	1.039
	SRR3591713	Yellow flower	0.093
SRP173429	SRR8316895	Juvenile bud stage	32.810
	SRR8316896	Juvenile bud stage	3.779
	SRR8316897	Juvenile bud stage	1.819
	SRR8316894	Third green stage	9.680
	SRR8316900	Third green stage	0.657
	SRR8316901	Third green stage	1.070
	SRR8316898	Complete white stage	0.011
	SRR8316899	Complete white stage	54.429
	SRR8316903	Complete white stage	17.444
	SRR8316902	Silver flowering stage	0.649
	SRR8316904	Silver flowering stage	0.681
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.073
SRP132670	SRR6706286	Control	3.467
	SRR6706287	Light intensity 50%	5.245
	SRR6706288	Light intensity 20%	3.995
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.858
	CNS0095593	Slightly white alabastrum(diploid) 2	5.830
	CNS0095594	Slightly white alabastrum(diploid) 3	24.744
	CNS0095595	Whole white alabastrum(diploid) 2	15.391
	CNS0095596	Whole white alabastrum(diploid) 3	3.120
	CNS0095597	Whole white alabastrum(diploid) 4	7.740
	CNS0095598	Silvery flower (diploied) 1	20.276
	CNS0095599	Silvery flower (diploied) 2	3.765
	CNS0095600	Silvery flower (diploied) 3	44.839
	CNS0095601	Golden flower (diploid) 1	25.906
	CNS0095602	Golden flower (diploid) 2	84.947
	CNS0095603	Golden flower (diploid) 3	78.264
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.456
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.997
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.055
	CNS0095610	Silvery flower (tetraploid) 1	0.200
	CNS0095611	Silvery flower (tetraploid) 2	20.519
	CNS0095612	Silvery flower (tetraploid) 3	2.064
	CNS0095613	Golden flower (tetraploid) 1	0.236
	CNS0095614	Golden flower (tetraploid) 2	0.272
	CNS0095615	Golden flower (tetraploid) 3	0.101
CRA001975	CRR073297	Stem 1	1.679
	CRR073298	Stem 2	2.274
	CRR073299	Stem 3	2.090
	CRR073300	Leaf 1	0.105
	CRR073301	Leaf 2	0.373
	CRR073302	Leaf 3	0.017
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.078
	CRR073305	Juvenile bud 3	0.412
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.015
	CRR073308	Third green 3	0.054
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.049
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.057
	CRR073318	Tawny withering 1	2.907
	CRR073319	Tawny withering 2	0.343
	CRR073320	Tawny withering 3	2.374