Detail information of GWHGAAZE022223


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276905.10PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform X2 [Vitis vinifera]
trEMBLtr|F6H736|F6H736_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47983.1}
TAIR10AT3G06670.10binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6887461568897076+
GWHAAZE00000006mRNA6887461568897076+
GWHAAZE00000006exon6887461568874659+
GWHAAZE00000006exon6887587968875959+
GWHAAZE00000006exon6887608568876184+
GWHAAZE00000006exon6887627368876357+
GWHAAZE00000006exon6887644268876491+
GWHAAZE00000006exon6887713968877230+
GWHAAZE00000006exon6887816068878219+
GWHAAZE00000006exon6887995768880056+
GWHAAZE00000006exon6888016668880243+
GWHAAZE00000006exon6888280768882871+
GWHAAZE00000006exon6888300668883074+
GWHAAZE00000006exon6888315268883229+
GWHAAZE00000006exon6888331468883409+
GWHAAZE00000006exon6888525868885328+
GWHAAZE00000006exon6888550168885578+
GWHAAZE00000006exon6888566968885762+
GWHAAZE00000006exon6888778268887877+
GWHAAZE00000006exon6889078768891004+
GWHAAZE00000006exon6889123168891345+
GWHAAZE00000006exon6889440568894536+
GWHAAZE00000006exon6889463768894690+
GWHAAZE00000006exon6889556668895675+
GWHAAZE00000006exon6889593968896040+
GWHAAZE00000006exon6889658768897076+
GWHAAZE00000006CDS6887461568874659+
GWHAAZE00000006CDS6887587968875959+
GWHAAZE00000006CDS6887608568876184+
GWHAAZE00000006CDS6887627368876357+
GWHAAZE00000006CDS6887644268876491+
GWHAAZE00000006CDS6887713968877230+
GWHAAZE00000006CDS6887816068878219+
GWHAAZE00000006CDS6887995768880056+
GWHAAZE00000006CDS6888016668880243+
GWHAAZE00000006CDS6888280768882871+
GWHAAZE00000006CDS6888300668883074+
GWHAAZE00000006CDS6888315268883229+
GWHAAZE00000006CDS6888331468883409+
GWHAAZE00000006CDS6888525868885328+
GWHAAZE00000006CDS6888550168885578+
GWHAAZE00000006CDS6888566968885762+
GWHAAZE00000006CDS6888778268887877+
GWHAAZE00000006CDS6889078768891004+
GWHAAZE00000006CDS6889123168891345+
GWHAAZE00000006CDS6889440568894536+
GWHAAZE00000006CDS6889463768894690+
GWHAAZE00000006CDS6889556668895675+
GWHAAZE00000006CDS6889593968896040+
GWHAAZE00000006CDS6889658768897076+
Transcript Sequence

Network for GWHGAAZE022223

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04802.16SMK-11723592.10E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17491SMEK, PPP4R3 Glucagon signaling pathway map04922
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.020
SRR3591706second leaf18.807
SRR3591707mature leaf14.860
SRR3591708Shoot apex30.848
SRR3591709Stem31.146
SRR3591710White floral bud24.240
SRR3591711White flower26.942
SRR3591712Green floral bud25.147
SRR3591713Yellow flower20.404
SRP173429 SRR8316895Juvenile bud stage 17.198
SRR8316896Juvenile bud stage 22.967
SRR8316897Juvenile bud stage 13.149
SRR8316894Third green stage 9.605
SRR8316900Third green stage 20.963
SRR8316901Third green stage 18.480
SRR8316898Complete white stage 5.824
SRR8316899Complete white stage 26.624
SRR8316903Complete white stage 13.914
SRR8316902Silver flowering stage7.013
SRR8316904Silver flowering stage13.656
SRR8316905Silver flowering stage5.267
SRR8316906Gold flowering stage 15.677
SRR8316907Gold flowering stage 12.197
SRR8316908Gold flowering stage 13.554
SRP132670SRR6706286Control10.192
SRR6706287Light intensity 50%12.201
SRR6706288Light intensity 20%11.224
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.359
CNS0095593Slightly white alabastrum(diploid) 212.979
CNS0095594Slightly white alabastrum(diploid) 311.852
CNS0095595Whole white alabastrum(diploid) 211.157
CNS0095596Whole white alabastrum(diploid) 36.474
CNS0095597Whole white alabastrum(diploid) 48.430
CNS0095598Silvery flower (diploied) 121.265
CNS0095599Silvery flower (diploied) 217.550
CNS0095600Silvery flower (diploied) 320.791
CNS0095601Golden flower (diploid) 119.969
CNS0095602Golden flower (diploid) 224.012
CNS0095603Golden flower (diploid) 323.402
CNS0095604Slightly white alabastrum(tetraploid) 114.451
CNS0095605Slightly white alabastrum(tetraploid) 29.227
CNS0095606Slightly white alabastrum(tetraploid) 328.131
CNS0095607Whole white alabastrum(tetraploid) 19.936
CNS0095608Whole white alabastrum(tetraploid) 26.472
CNS0095609Whole white alabastrum(tetraploid) 314.723
CNS0095610Silvery flower (tetraploid) 120.536
CNS0095611Silvery flower (tetraploid) 225.434
CNS0095612Silvery flower (tetraploid) 318.998
CNS0095613Golden flower (tetraploid) 18.357
CNS0095614Golden flower (tetraploid) 216.414
CNS0095615Golden flower (tetraploid) 312.853
CRA001975CRR073297Stem 124.295
CRR073298Stem 219.749
CRR073299Stem 312.758
CRR073300Leaf 122.158
CRR073301Leaf 221.755
CRR073302Leaf 311.453
CRR073303Juvenile bud 113.245
CRR073304Juvenile bud 29.072
CRR073305Juvenile bud 311.660
CRR073306Third green 13.386
CRR073307Third green 23.090
CRR073308Third green 35.198
CRR073309Second white 13.102
CRR073310Second white 24.903
CRR073311Second white 34.470
CRR073312Silver flowering 12.270
CRR073313Silver flowering 22.917
CRR073314Silver flowering 33.237
CRR073315Gold flowering 17.729
CRR073316Gold flowering 213.711
CRR073317Gold flowering 34.774
CRR073318Tawny withering 117.564
CRR073319Tawny withering 216.988
CRR073320Tawny withering 314.402