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Detail information of GWHGAAZE022223
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002276905.1
0
PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform X2 [Vitis vinifera]
trEMBL
tr|F6H736|F6H736_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CCB47983.1}
TAIR10
AT3G06670.1
0
binding
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000006
gene
68874615
68897076
+
GWHAAZE00000006
mRNA
68874615
68897076
+
GWHAAZE00000006
exon
68874615
68874659
+
GWHAAZE00000006
exon
68875879
68875959
+
GWHAAZE00000006
exon
68876085
68876184
+
GWHAAZE00000006
exon
68876273
68876357
+
GWHAAZE00000006
exon
68876442
68876491
+
GWHAAZE00000006
exon
68877139
68877230
+
GWHAAZE00000006
exon
68878160
68878219
+
GWHAAZE00000006
exon
68879957
68880056
+
GWHAAZE00000006
exon
68880166
68880243
+
GWHAAZE00000006
exon
68882807
68882871
+
GWHAAZE00000006
exon
68883006
68883074
+
GWHAAZE00000006
exon
68883152
68883229
+
GWHAAZE00000006
exon
68883314
68883409
+
GWHAAZE00000006
exon
68885258
68885328
+
GWHAAZE00000006
exon
68885501
68885578
+
GWHAAZE00000006
exon
68885669
68885762
+
GWHAAZE00000006
exon
68887782
68887877
+
GWHAAZE00000006
exon
68890787
68891004
+
GWHAAZE00000006
exon
68891231
68891345
+
GWHAAZE00000006
exon
68894405
68894536
+
GWHAAZE00000006
exon
68894637
68894690
+
GWHAAZE00000006
exon
68895566
68895675
+
GWHAAZE00000006
exon
68895939
68896040
+
GWHAAZE00000006
exon
68896587
68897076
+
GWHAAZE00000006
CDS
68874615
68874659
+
GWHAAZE00000006
CDS
68875879
68875959
+
GWHAAZE00000006
CDS
68876085
68876184
+
GWHAAZE00000006
CDS
68876273
68876357
+
GWHAAZE00000006
CDS
68876442
68876491
+
GWHAAZE00000006
CDS
68877139
68877230
+
GWHAAZE00000006
CDS
68878160
68878219
+
GWHAAZE00000006
CDS
68879957
68880056
+
GWHAAZE00000006
CDS
68880166
68880243
+
GWHAAZE00000006
CDS
68882807
68882871
+
GWHAAZE00000006
CDS
68883006
68883074
+
GWHAAZE00000006
CDS
68883152
68883229
+
GWHAAZE00000006
CDS
68883314
68883409
+
GWHAAZE00000006
CDS
68885258
68885328
+
GWHAAZE00000006
CDS
68885501
68885578
+
GWHAAZE00000006
CDS
68885669
68885762
+
GWHAAZE00000006
CDS
68887782
68887877
+
GWHAAZE00000006
CDS
68890787
68891004
+
GWHAAZE00000006
CDS
68891231
68891345
+
GWHAAZE00000006
CDS
68894405
68894536
+
GWHAAZE00000006
CDS
68894637
68894690
+
GWHAAZE00000006
CDS
68895566
68895675
+
GWHAAZE00000006
CDS
68895939
68896040
+
GWHAAZE00000006
CDS
68896587
68897076
+
Transcript Sequence
>GWHTAAZE022251 ATGGGCACGGAAGAGAAGTCACCAGTTTCTAACAATCCGATACAGCGTGTTAAGGTATATCGTATGAATGATGATGGAAAGTGGGATGACCAAGGAACTGGGCATGTCACCGTTGATTATTTGGAGAGATCAGAAGAATTGGGTTTGTTTGTTATTGATGAAGAGGACAATGAAACACTACTTCTGCACCGCATTAGATCGGACGATATATATCGGAAGCAAGAAGATACAATAATTTCTTGGAGAGACCCTCAGTATTCAACTGAACTTGCTCTTAGCTTTCAAGAGACTACGGGCTGCTCTTACATATGGGACCACATTTCTAGCGTGCAAAGGAGTCAGCAGTTTAATACTCTTAACGATGAGACATACCACTGTGTCACTGGTGGTTTGAAGCAGTTACCTGGGCAATTGCCTGCAGTTGAGCTATCAACACTTCCTATTATACTTAAGATTTTGGTTGAGAGTGGTGCTGCTGATAAGTTGCATTTGACAGATCTAATATTACATGATCAAGGTTTTTTTGGGAAGCTGATGGATCTATTCAGAATATGTGAAGATTTAAAAAACATCGGTGGTCTTCACTTGATATTCAAAATAGTCAGAAGGATCATTTTACTCAATAGTCCTCAGATCTTTGAGAAAATATTTGGGGATGAGTTGATCATGGATATTATTGGATCCCTTGAATATGATCCTGAGGTACCTCATATCCATCATCGCAATTTCCTGAAAGAGCACGTGGTGTTTAAGGAGGCCATACCCATTAAAGATCTCCTCGTCCTGTCAAAGATACACCAGACATACAGAATTGGTTATCTGAAGGATTTTGTTTTTCCTAGGGCAATGGATGAGGCAACAGTTGCAAGTCTCAATACTATAATTCATTCAAATAATGCAATTGTTGTTTCCTTGTTAAAAGATGACAGCACTTTTATCCAGGAATTATTTGCTAGGTTGAAATCATCTACTGTATCTGCAGAGTCAAAGAAAAAATTGGTATTTTTCTTGCATGAATTTTGTTGTCTAAGCAAGAGCTTGCAGATGGCGCAGCAGATCAAGTTATGTAGGGATCTCATGAGTGTAGGCATCTTTGACATCATTGCAGACATTTTACGTAGTGAAGATAAAAAACTTGTATTAACTGGGACAGACATCCTAATTCTTTTCTTGAATCAGGATCCAAGCCTTATGCGTTCTTATGTCACCCGGCAGGAAGGCATCCCTCTCCTTGGACTTCTGGTGAAAGGAATGATAACTGATTTTGCAGATGATATGCATTGCCAATTTCTTGAAATTCTTCGCAGTCTTTTGGATTCGTTCACATCAGGATCACAGAGAGATACTATTATTGAGATGTTTTATGAGAAGCATTTGGGTCAATTGATTGATGTTATTACATCATCATGCCCTCCAAATGGAGCTGCTCAATCTGTCGGTAAATCTGCAGGCTCTGGTGGAACGATTGGAAGTCAAATTTCAGCGAAGCCTGAAATTCTTTTGAACATATGTGATCTCCTATGTTATTGTGTCCTGCACCACCCATATAGAATAAAGTGCAACTTTCTCCTTAATAACGTTATAGAAAAAGTTTTGTTTCTGACTCGAAGAAGAGAAAAGTATCTCGTAGTTGCTGCTGTTCGATTTGTCCGAACTCTTATCTCACGCAATGATGAGCATCTAACGAATCACATTGTGAAGAACAACCTTTTGAAACCAATTGTTGATGCTTTTGTTGTCAATGGAAATCGTTATAATCTGTTACACTCTGCAGTTCTGGAACTTTTTGAACATATCCAGAAGGAGAACTTGAAGATATTACTTAAATATTTAGTTGATTCATTCTGGGATCAGTTGTCTTTAGAGAACTCAGGAATGAAAAGCACCCGTAACATGTTAGACTCAAGAAAAAGAACAGACGAACGTGCTTTGGAGAAAGAAGAGGAAGATTACTTCAATGAGGAAAGCGATGAGGAAGATTCAGCATCTGCATCATTGTCAAAAACCAAAAGTGCGCGCGCTCAGCCTGCTTTCTCCAATGGATCTGCTGCAAGCTACCCATCATCAAGATCTGGGGGACTTGTTGACTATGACGATGACGAGGATGATGAAGACTACAAGCCACCACCGAGAAAACAGCCAGAAATAACTAATGAAGATGAGGAAACAATCGAGTCCTTTGGGTTGAAGCGAAAATTGGCACAGAAAGGGGAGCCTGAGCTCTTAAAGAAACACAGGCTAGTTAAAAACCCCAAGGGGAAAAATAGCGTCTTTGCAGCTTTGTGCTCAACTTTAAGTCACGCAGTTTTACCCTCTAAGAAAACGTTAAGTTCTGGGCCCATTGTTCCGCGTTCCTCAGACTCAAACAAGACCTCAAGTGAAGGAAATCAGGAAGAGAAAGCATCTGTAAGTTGTTCCAGTACAGACAAGGAAACAGACAATCCTAGAAGTTGTACATCAAGCTTGCATGGTAGTAAAGAAAACAGGCAACCTGGCAGAGATGACTGTCCATTGATACCGCCCAAGTCTTCACCCGAGATGGCAGTAAATGGATCTTAA
Network for GWHGAAZE022223
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF04802.16
SMK-1
172
359
2.10E-60
Protein Sequence
>GWHPAAZE022238 MGTEEKSPVSNNPIQRVKVYRMNDDGKWDDQGTGHVTVDYLERSEELGLFVIDEEDNETLLLHRIRSDDIYRKQEDTIISWRDPQYSTELALSFQETTGCSYIWDHISSVQRSQQFNTLNDETYHCVTGGLKQLPGQLPAVELSTLPIILKILVESGAADKLHLTDLILHDQGFFGKLMDLFRICEDLKNIGGLHLIFKIVRRIILLNSPQIFEKIFGDELIMDIIGSLEYDPEVPHIHHRNFLKEHVVFKEAIPIKDLLVLSKIHQTYRIGYLKDFVFPRAMDEATVASLNTIIHSNNAIVVSLLKDDSTFIQELFARLKSSTVSAESKKKLVFFLHEFCCLSKSLQMAQQIKLCRDLMSVGIFDIIADILRSEDKKLVLTGTDILILFLNQDPSLMRSYVTRQEGIPLLGLLVKGMITDFADDMHCQFLEILRSLLDSFTSGSQRDTIIEMFYEKHLGQLIDVITSSCPPNGAAQSVGKSAGSGGTIGSQISAKPEILLNICDLLCYCVLHHPYRIKCNFLLNNVIEKVLFLTRRREKYLVVAAVRFVRTLISRNDEHLTNHIVKNNLLKPIVDAFVVNGNRYNLLHSAVLELFEHIQKENLKILLKYLVDSFWDQLSLENSGMKSTRNMLDSRKRTDERALEKEEEDYFNEESDEEDSASASLSKTKSARAQPAFSNGSAASYPSSRSGGLVDYDDDEDDEDYKPPPRKQPEITNEDEETIESFGLKRKLAQKGEPELLKKHRLVKNPKGKNSVFAALCSTLSHAVLPSKKTLSSGPIVPRSSDSNKTSSEGNQEEKASVSCSSTDKETDNPRSCTSSLHGSKENRQPGRDDCPLIPPKSSPEMAVNGS
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K17491
SMEK, PPP4R3
Glucagon signaling pathway
map04922
Longevity regulating pathway - worm
map04212
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
34.020
SRR3591706
second leaf
18.807
SRR3591707
mature leaf
14.860
SRR3591708
Shoot apex
30.848
SRR3591709
Stem
31.146
SRR3591710
White floral bud
24.240
SRR3591711
White flower
26.942
SRR3591712
Green floral bud
25.147
SRR3591713
Yellow flower
20.404
SRP173429
SRR8316895
Juvenile bud stage
17.198
SRR8316896
Juvenile bud stage
22.967
SRR8316897
Juvenile bud stage
13.149
SRR8316894
Third green stage
9.605
SRR8316900
Third green stage
20.963
SRR8316901
Third green stage
18.480
SRR8316898
Complete white stage
5.824
SRR8316899
Complete white stage
26.624
SRR8316903
Complete white stage
13.914
SRR8316902
Silver flowering stage
7.013
SRR8316904
Silver flowering stage
13.656
SRR8316905
Silver flowering stage
5.267
SRR8316906
Gold flowering stage
15.677
SRR8316907
Gold flowering stage
12.197
SRR8316908
Gold flowering stage
13.554
SRP132670
SRR6706286
Control
10.192
SRR6706287
Light intensity 50%
12.201
SRR6706288
Light intensity 20%
11.224
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
10.359
CNS0095593
Slightly white alabastrum(diploid) 2
12.979
CNS0095594
Slightly white alabastrum(diploid) 3
11.852
CNS0095595
Whole white alabastrum(diploid) 2
11.157
CNS0095596
Whole white alabastrum(diploid) 3
6.474
CNS0095597
Whole white alabastrum(diploid) 4
8.430
CNS0095598
Silvery flower (diploied) 1
21.265
CNS0095599
Silvery flower (diploied) 2
17.550
CNS0095600
Silvery flower (diploied) 3
20.791
CNS0095601
Golden flower (diploid) 1
19.969
CNS0095602
Golden flower (diploid) 2
24.012
CNS0095603
Golden flower (diploid) 3
23.402
CNS0095604
Slightly white alabastrum(tetraploid) 1
14.451
CNS0095605
Slightly white alabastrum(tetraploid) 2
9.227
CNS0095606
Slightly white alabastrum(tetraploid) 3
28.131
CNS0095607
Whole white alabastrum(tetraploid) 1
9.936
CNS0095608
Whole white alabastrum(tetraploid) 2
6.472
CNS0095609
Whole white alabastrum(tetraploid) 3
14.723
CNS0095610
Silvery flower (tetraploid) 1
20.536
CNS0095611
Silvery flower (tetraploid) 2
25.434
CNS0095612
Silvery flower (tetraploid) 3
18.998
CNS0095613
Golden flower (tetraploid) 1
8.357
CNS0095614
Golden flower (tetraploid) 2
16.414
CNS0095615
Golden flower (tetraploid) 3
12.853
CRA001975
CRR073297
Stem 1
24.295
CRR073298
Stem 2
19.749
CRR073299
Stem 3
12.758
CRR073300
Leaf 1
22.158
CRR073301
Leaf 2
21.755
CRR073302
Leaf 3
11.453
CRR073303
Juvenile bud 1
13.245
CRR073304
Juvenile bud 2
9.072
CRR073305
Juvenile bud 3
11.660
CRR073306
Third green 1
3.386
CRR073307
Third green 2
3.090
CRR073308
Third green 3
5.198
CRR073309
Second white 1
3.102
CRR073310
Second white 2
4.903
CRR073311
Second white 3
4.470
CRR073312
Silver flowering 1
2.270
CRR073313
Silver flowering 2
2.917
CRR073314
Silver flowering 3
3.237
CRR073315
Gold flowering 1
7.729
CRR073316
Gold flowering 2
13.711
CRR073317
Gold flowering 3
4.774
CRR073318
Tawny withering 1
17.564
CRR073319
Tawny withering 2
16.988
CRR073320
Tawny withering 3
14.402