Gene detail

Detail information of GWHGAAZE022245

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010267949.1	PREDICTED: ATP-citrate synthase beta chain protein 2 [Nelumbo nucifera]
COG	YP_004151629.1	ATP-citrate lyase/succinyl-CoA ligase
Swissprot	tr\|Q93VT8\|ACLB1_ORYSJ	ATP-citrate synthase beta chain protein 1
trEMBL	tr\|A0A061ENZ3\|A0A061ENZ3_THECC	ATP citrate lyase subunit B 2 isoform 1 {ECO:0000313\|EMBL:EOY06730.1}
TAIR10	AT5G49460.1	ATP citrate lyase subunit B 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69108972	69114459	+
GWHAAZE00000006	mRNA	69108972	69114459	+
GWHAAZE00000006	exon	69108972	69109071	+
GWHAAZE00000006	exon	69109212	69109314	+
GWHAAZE00000006	exon	69110270	69110335	+
GWHAAZE00000006	exon	69110416	69110539	+
GWHAAZE00000006	exon	69110752	69110886	+
GWHAAZE00000006	exon	69111079	69111139	+
GWHAAZE00000006	exon	69111248	69111324	+
GWHAAZE00000006	exon	69111534	69111689	+
GWHAAZE00000006	exon	69111856	69111984	+
GWHAAZE00000006	exon	69112113	69112245	+
GWHAAZE00000006	exon	69112355	69112482	+
GWHAAZE00000006	exon	69112670	69112775	+
GWHAAZE00000006	exon	69112888	69112964	+
GWHAAZE00000006	exon	69113447	69113517	+
GWHAAZE00000006	exon	69113649	69113933	+
GWHAAZE00000006	exon	69114031	69114459	+
GWHAAZE00000006	CDS	69108972	69109071	+
GWHAAZE00000006	CDS	69109212	69109314	+
GWHAAZE00000006	CDS	69110270	69110335	+
GWHAAZE00000006	CDS	69110416	69110539	+
GWHAAZE00000006	CDS	69110752	69110886	+
GWHAAZE00000006	CDS	69111079	69111139	+
GWHAAZE00000006	CDS	69111248	69111324	+
GWHAAZE00000006	CDS	69111534	69111689	+
GWHAAZE00000006	CDS	69111856	69111984	+
GWHAAZE00000006	CDS	69112113	69112245	+
GWHAAZE00000006	CDS	69112355	69112482	+
GWHAAZE00000006	CDS	69112670	69112775	+
GWHAAZE00000006	CDS	69112888	69112964	+
GWHAAZE00000006	CDS	69113447	69113517	+
GWHAAZE00000006	CDS	69113649	69113933	+
GWHAAZE00000006	CDS	69114031	69114106	+
GWHAAZE00000006	three_prime_UTR	69114107	69114459	+

Transcript Sequence
>GWHTAAZE022273 ATGGCTACTGGACAAATTTTTTCCCGAACAACACAAGCATTGTTCTACAATTATAAGCAACTACCTATCCAACGGATGCTTGACTTTGACTTCCTTTGCGGGAGGGAAACACCTTCAGTTGCTGGAATTATAAATCCTGGTTCTGAGGGATTTCAGAAGCTCTTCTTCGGTCAGGAGGAAATTGCCATACCAGTACACTCAACCATTGAAGCCGCTTGTGCTGCTCATCCTACCGCTGATGTTTTCATCAACTTTGCATCCTTCAGAAGTGCTGCTGCTTCATCCAAGGCTGCTCTCAGACAGCCAACTATTAGAGTTGTGGCTATAATAGCTGAAGGTGTTCCTGAGTTAGATGCTAAGGAGTTAATTGCATATGCAAGGACAAACAATAAGGTAGTTATTGGACCTGCTACCGTCGGGGGTATTCAAGCTGGAGCTTTTAAGATTGGCGACACTGCTGGAACAATTGATAATATCATTCAGTGCAAGCTGTACAGGCCTGGATCTGTTGGCTTTGTGTCCAAATCTGGTGGTATGTCTAATGAAATGTACAATACAATTGCCCGTGTGACAGATGGAATATATGAAGGTATTGCAATTGGAGGAGATGTGTTTCCGGGCTCTACTCTTTCTGATCATGTATTGCGGTTCAACAACATCCCACAGGTTAGAATGATGGTCGTACTTGGTGAACTTGGTGGGCGGGATGAGTATTCCCTAGTTGAAGCCCTCAAACAGGGAAAAATTAACAAACCAGTTGTTGCTTGGGTCAGTGGAACCTGCGCACGGCTTTTCAAGTCAGAAGTACAATTTGGCCACGCGGGAGCAAAGAGTGGTGGTGAGATGGAGTCTGCACAAGCGAAGAATCAAGCACTTAGGGAGGCCGGAGCTTTTGTCCCCACTTCATATGAAGCATTTGAAGTTGTGATTAAGGATACATTTGAGAAGTTGGCTGGTGAGGGAAAGATTGCTCCTATAAAAGAAGTAAAGCCTCCACAAATCCCTGAGGATCTTAACATTGCAATTAAGAGTGGGAAAGTACGAGCTCCAACTCATATTATTTCCACAATCTCTGACGATAGAGGTGAAGAGCCGTGCTATGCTGGCGTACCAATGTCCTCAATTGTTGAACAAGGATATGGGGTGGGTGATGTCATTTCCCTATTGTGGTTCAAACGCAGCCTTCCACGATACTGTACTCAATTTATTGAGATATGCATCATGTTATGTGCCGACCATGGTCCCTGTGTCTCTGGTGCTCACAACACAATAGTAACTGCAAGAGCAGGAAAAGACCTCGTGTCCAGCCTTGTTTCAGGTTTGCTAACCATTGGTCCCCGATTTGGTGGAGCTGTTGATGATGCTGCGCGATACTTCAAGGATGCTTATGACCGGGGCCTCACACCGTATGAATTTGTAGAATCAATGAAAAAGAAAGGCATTCGTGTTCCAGGAATTGGCCACAGGATCAAGAGGGGTGACAACCGAGATAAGCGTGTAGAGCTGCTACAACAATTTTCACGTACACATTTCCCTTCCGTGAAGTACATGGAGTATGCAGTTCAAGTGGAAACCTACACTCTCTCGAAAGCAAATAACCTAGTCCTCAATGTTGATGGTGCCATCGGGACCCTATTCTTGGATCTTCTTGCTGGCAGTGGAATGTTCACCAAGCCAGAAATTGACGAGATTGTTGAGATCGGTTACCTTAATGGGCTCTTTGTACTCGCCCGTTCCATTGGCCTCATTGGGCACACGTTTGACCAGAAGCGATTGAAGCAGCCTCTATACCGCCACCCATGGGAAGATGTTCTGTACACCAAGTGATGCACTTCGGTATGCAAATTGTTGCGGTGACTGGTTCGGTATTTAGATTAGTGTTTGTTCTGCTAATGGCAGGCTGAGCACTCGTTTGCATTGTTTTAGCAATGTTTTTTTTTTTTTAATTAACGGGGGTGTATGTCAATTTGTAGTTTGGAGGAAGAAATAATAGGTACTATTGTATTGGATTATGAATGTACGTTGAAGGAGTGTTGGGGCCATTCCCTTTGTATATTGAATAAATTCAGTTGTATTTCTCTCTCTTGGGATGGTTAGCTTAAATGCGCAGGGGTGAAACTAAGCTAGAATAAATGTTTCGGCCAACATTGAACTTATAAATTTGAAGAAATTGTGTTGAA

Network for GWHGAAZE022245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00549.20	Ligase_CoA	174	297	6.20E-12
PF00285.22	Citrate_synt	399	597	1.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01648	ACLY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.934
	SRR3591706	second leaf	39.990
	SRR3591707	mature leaf	8.114
	SRR3591708	Shoot apex	55.048
	SRR3591709	Stem	31.015
	SRR3591710	White floral bud	22.872
	SRR3591711	White flower	23.868
	SRR3591712	Green floral bud	45.618
	SRR3591713	Yellow flower	18.956
SRP173429	SRR8316895	Juvenile bud stage	53.243
	SRR8316896	Juvenile bud stage	60.950
	SRR8316897	Juvenile bud stage	24.769
	SRR8316894	Third green stage	18.146
	SRR8316900	Third green stage	46.233
	SRR8316901	Third green stage	46.647
	SRR8316898	Complete white stage	7.401
	SRR8316899	Complete white stage	30.037
	SRR8316903	Complete white stage	14.559
	SRR8316902	Silver flowering stage	9.151
	SRR8316904	Silver flowering stage	14.071
	SRR8316905	Silver flowering stage	6.360
	SRR8316906	Gold flowering stage	28.422
	SRR8316907	Gold flowering stage	28.365
	SRR8316908	Gold flowering stage	36.795
SRP132670	SRR6706286	Control	35.078
	SRR6706287	Light intensity 50%	37.258
	SRR6706288	Light intensity 20%	40.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.566
	CNS0095593	Slightly white alabastrum(diploid) 2	40.622
	CNS0095594	Slightly white alabastrum(diploid) 3	46.694
	CNS0095595	Whole white alabastrum(diploid) 2	32.961
	CNS0095596	Whole white alabastrum(diploid) 3	26.557
	CNS0095597	Whole white alabastrum(diploid) 4	26.568
	CNS0095598	Silvery flower (diploied) 1	28.301
	CNS0095599	Silvery flower (diploied) 2	31.686
	CNS0095600	Silvery flower (diploied) 3	20.453
	CNS0095601	Golden flower (diploid) 1	22.187
	CNS0095602	Golden flower (diploid) 2	20.336
	CNS0095603	Golden flower (diploid) 3	19.684
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.355
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	105.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.857
	CNS0095610	Silvery flower (tetraploid) 1	26.419
	CNS0095611	Silvery flower (tetraploid) 2	14.902
	CNS0095612	Silvery flower (tetraploid) 3	20.319
	CNS0095613	Golden flower (tetraploid) 1	23.772
	CNS0095614	Golden flower (tetraploid) 2	32.828
	CNS0095615	Golden flower (tetraploid) 3	12.566
CRA001975	CRR073297	Stem 1	135.509
	CRR073298	Stem 2	101.609
	CRR073299	Stem 3	110.572
	CRR073300	Leaf 1	71.791
	CRR073301	Leaf 2	67.595
	CRR073302	Leaf 3	61.053
	CRR073303	Juvenile bud 1	49.837
	CRR073304	Juvenile bud 2	32.810
	CRR073305	Juvenile bud 3	52.464
	CRR073306	Third green 1	15.983
	CRR073307	Third green 2	11.053
	CRR073308	Third green 3	17.541
	CRR073309	Second white 1	16.709
	CRR073310	Second white 2	12.584
	CRR073311	Second white 3	13.749
	CRR073312	Silver flowering 1	19.476
	CRR073313	Silver flowering 2	27.591
	CRR073314	Silver flowering 3	27.089
	CRR073315	Gold flowering 1	13.824
	CRR073316	Gold flowering 2	17.944
	CRR073317	Gold flowering 3	17.632
	CRR073318	Tawny withering 1	37.046
	CRR073319	Tawny withering 2	27.698
	CRR073320	Tawny withering 3	43.966