Gene detail

Detail information of GWHGAAZE022246

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006488840.1	PREDICTED: ATP-citrate synthase beta chain protein 2-like [Citrus sinensis]
COG	YP_004151629.1	ATP-citrate lyase/succinyl-CoA ligase
Swissprot	tr\|Q93VT8\|ACLB1_ORYSJ	ATP-citrate synthase beta chain protein 1
trEMBL	tr\|A0A067FX03\|A0A067FX03_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO71939.1}
TAIR10	AT3G06650.1	ATP-citrate lyase B-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69126033	69131670	+
GWHAAZE00000006	mRNA	69126033	69131670	+
GWHAAZE00000006	exon	69126033	69126132	+
GWHAAZE00000006	exon	69126273	69126375	+
GWHAAZE00000006	exon	69127858	69127923	+
GWHAAZE00000006	exon	69128004	69128127	+
GWHAAZE00000006	exon	69128340	69128474	+
GWHAAZE00000006	exon	69128667	69128720	+
GWHAAZE00000006	exon	69128827	69128936	+
GWHAAZE00000006	exon	69129352	69129400	+
GWHAAZE00000006	exon	69129514	69129642	+
GWHAAZE00000006	exon	69129770	69129902	+
GWHAAZE00000006	exon	69130012	69130139	+
GWHAAZE00000006	exon	69130327	69130432	+
GWHAAZE00000006	exon	69130545	69130621	+
GWHAAZE00000006	exon	69131018	69131088	+
GWHAAZE00000006	exon	69131222	69131497	+
GWHAAZE00000006	exon	69131595	69131670	+
GWHAAZE00000006	CDS	69126033	69126132	+
GWHAAZE00000006	CDS	69126273	69126375	+
GWHAAZE00000006	CDS	69127858	69127923	+
GWHAAZE00000006	CDS	69128004	69128127	+
GWHAAZE00000006	CDS	69128340	69128474	+
GWHAAZE00000006	CDS	69128667	69128720	+
GWHAAZE00000006	CDS	69128827	69128936	+
GWHAAZE00000006	CDS	69129352	69129400	+
GWHAAZE00000006	CDS	69129514	69129642	+
GWHAAZE00000006	CDS	69129770	69129902	+
GWHAAZE00000006	CDS	69130012	69130139	+
GWHAAZE00000006	CDS	69130327	69130432	+
GWHAAZE00000006	CDS	69130545	69130621	+
GWHAAZE00000006	CDS	69131018	69131088	+
GWHAAZE00000006	CDS	69131222	69131497	+
GWHAAZE00000006	CDS	69131595	69131670	+

Transcript Sequence
>GWHTAAZE022274 ATGGCTACTGGACAAATTTTTTCTCGAACAACACAAGCATTGTTCTACAATTATAAGCAACTACCTATCCAACGGATGCTTGACTTTGACTTCCTTTGCGGGAGGGAAACACCTTCAGTTGCTGGAATTATAAATCCTGGTTCTGAGGGGTTTCAGAAGCTCTTCTTCGGTCAGGAGGAAATTGCCATACCAGTGCACTCAACCATTGAAGCTGCTTGTGCTGCTCATCCTACCGCTGATGTTTTCATCAACTTTGCATCCTTCAGAAGTGCTGCTGCTTCATCCAAGGCTGCACTCAGACAGCCAACTATTAGAGTTGTGGCTATAATAGCTGAAGGTGTTCCTGAGTTAGATGCTAAGGAGTTAATTGCATATGCAAGGACAAACAATAAGGTAGTTATTGGACCTGCTACCGTCGGGGGTATTCAAGCTGGAGCTTTTAAGATTGGCGACACTGCTGGAACAATTGATAATATCATTCAGTGCAAGCTGTACAGGCCTGGATCTGTTGGCTTTGTTTCCAAATCTGGTGGTATGTCTAATGAAATGTACAATACAATTGCCCGTGTGACAGCCTTTATGGTTGGAATATACTCGCTAATTCTGATGTCTTTAGGTATTGCAATTGGAGGAGATGTGTTTCCGGCTCTACTCTTTCTGATCATGTATTGCGGTTCAACAACATCCCACAGTGGAACCTGCGCACGGCTTTTCAAGTCAGAAGTACAATTTGGCCATGCGGGAGCAAAGAGTGGTGGTGAGATGGAGTCTGCACAAGCGAAGAATCAAGCACTTAGGGAGGCCGGAGCTTTTGTCCCCACTTCATATGAAGCATTTGAAGTTGTGATTAAGGTTACATTTGAGAAGTTGGCTGGTGAGGAAAAGATTGCTCCTATAAAAGAAGTAAAGCCTCCACAAATCCCTGAGGATCTTAACATTGCAATTAAGAGTGGGAAAGTACGAGCTCCAACTCATATTATTTCCACAATCTCTGACGATAGAGGTGAAGAGCCGTGCTATGCTGGCGTACCAATGTCCTCAATTGTTGAACAAGGATATGGGGTGGGTGATGTCATTTCCCTATTGTGGTTCAAACGCAGCCTTCCACGATACTGTACTCAATTTATTGAGATATGCATCATGTTATGTGCCGACCATGGTCCCTGTGTCTCTGGTGCTCACAACACAATAGTAACTGCAAGAGCAGGAAAAGACCTCGTGTCCAGCCTTGTTTCAGGTTTGCTAACCATTGGTCCCCGATTTGGTGGAGCTGTTGATGATGCCGCGCGATACTTCAAGGATGCTTATGACAGGGGCCTCAAATCGTATGAATTTGTAGAATCAATGAAAAAGAAAGGCATTCGTATTCCAGGAATTGGCCACAGGGGTGACAACCGAGATAAGCGTGTAGGGCTGCTACAACAATTTTCACGTACACATTTCCCTTCCGTGAAGTACATGGAGCATGCAGTTCAAGTGGAAACCTACACTCTCTCAAAAGCAAATAACCTAGTCCTCAATGTCGATGGTGCCATCGGGAACCTATTCTTGGATCTTCTTGCTGGCAGTGGAATGTTCACCAAGCCAGAAATTGACGAGATTGTTGAGATCGGTTACCTTAACGGGCTCTTTGTACTCGCCCGTTCCCTTGGCCTCATTGGGCACACGTTTGACCAGAAGCGATTGAAGCAGCCTCTATACCGCCACCCATGGGAAGATGTTCTCTACACCAAGTGA

Network for GWHGAAZE022246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00285.22	Citrate_synt	371	567	5.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01648	ACLY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.218
	SRR3591706	second leaf	16.832
	SRR3591707	mature leaf	2.737
	SRR3591708	Shoot apex	17.891
	SRR3591709	Stem	12.061
	SRR3591710	White floral bud	8.069
	SRR3591711	White flower	8.528
	SRR3591712	Green floral bud	16.412
	SRR3591713	Yellow flower	7.169
SRP173429	SRR8316895	Juvenile bud stage	17.370
	SRR8316896	Juvenile bud stage	21.646
	SRR8316897	Juvenile bud stage	8.620
	SRR8316894	Third green stage	9.304
	SRR8316900	Third green stage	25.966
	SRR8316901	Third green stage	24.071
	SRR8316898	Complete white stage	9.960
	SRR8316899	Complete white stage	16.689
	SRR8316903	Complete white stage	16.505
	SRR8316902	Silver flowering stage	8.730
	SRR8316904	Silver flowering stage	11.740
	SRR8316905	Silver flowering stage	5.892
	SRR8316906	Gold flowering stage	15.740
	SRR8316907	Gold flowering stage	17.074
	SRR8316908	Gold flowering stage	15.856
SRP132670	SRR6706286	Control	17.277
	SRR6706287	Light intensity 50%	19.481
	SRR6706288	Light intensity 20%	22.543
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.299
	CNS0095593	Slightly white alabastrum(diploid) 2	17.507
	CNS0095594	Slightly white alabastrum(diploid) 3	13.654
	CNS0095595	Whole white alabastrum(diploid) 2	16.887
	CNS0095596	Whole white alabastrum(diploid) 3	14.958
	CNS0095597	Whole white alabastrum(diploid) 4	15.416
	CNS0095598	Silvery flower (diploied) 1	15.927
	CNS0095599	Silvery flower (diploied) 2	17.325
	CNS0095600	Silvery flower (diploied) 3	16.745
	CNS0095601	Golden flower (diploid) 1	10.692
	CNS0095602	Golden flower (diploid) 2	8.576
	CNS0095603	Golden flower (diploid) 3	9.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.581
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.448
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.583
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.047
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.454
	CNS0095610	Silvery flower (tetraploid) 1	10.714
	CNS0095611	Silvery flower (tetraploid) 2	9.240
	CNS0095612	Silvery flower (tetraploid) 3	14.133
	CNS0095613	Golden flower (tetraploid) 1	6.748
	CNS0095614	Golden flower (tetraploid) 2	8.615
	CNS0095615	Golden flower (tetraploid) 3	3.034
CRA001975	CRR073297	Stem 1	39.695
	CRR073298	Stem 2	33.884
	CRR073299	Stem 3	39.557
	CRR073300	Leaf 1	41.526
	CRR073301	Leaf 2	40.551
	CRR073302	Leaf 3	36.704
	CRR073303	Juvenile bud 1	34.947
	CRR073304	Juvenile bud 2	25.961
	CRR073305	Juvenile bud 3	35.242
	CRR073306	Third green 1	25.630
	CRR073307	Third green 2	19.992
	CRR073308	Third green 3	23.025
	CRR073309	Second white 1	17.342
	CRR073310	Second white 2	12.061
	CRR073311	Second white 3	8.551
	CRR073312	Silver flowering 1	9.916
	CRR073313	Silver flowering 2	9.119
	CRR073314	Silver flowering 3	8.563
	CRR073315	Gold flowering 1	7.950
	CRR073316	Gold flowering 2	10.026
	CRR073317	Gold flowering 3	8.218
	CRR073318	Tawny withering 1	14.822
	CRR073319	Tawny withering 2	13.739
	CRR073320	Tawny withering 3	23.944