Gene detail

Detail information of GWHGAAZE022263

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98739.1	0	unnamed protein product [Coffea canephora]
COG	YP_005369064.1	6E-35	polynucleotide Adenyltransferase
Swissprot	tr\|Q56XM9\|PAPS3_ARATH	1E-172	Nuclear poly(A) polymerase 3 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|A0A068TS28\|A0A068TS28_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98739.1}
TAIR10	AT3G06560.1	3E-141	poly(A) polymerase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69394682	69399385	-
GWHAAZE00000006	mRNA	69394682	69399385	-
GWHAAZE00000006	exon	69399353	69399385	-
GWHAAZE00000006	exon	69399154	69399231	-
GWHAAZE00000006	exon	69398537	69398644	-
GWHAAZE00000006	exon	69398222	69398284	-
GWHAAZE00000006	exon	69397967	69398086	-
GWHAAZE00000006	exon	69397553	69397666	-
GWHAAZE00000006	exon	69396607	69396669	-
GWHAAZE00000006	exon	69396216	69396518	-
GWHAAZE00000006	exon	69395937	69396101	-
GWHAAZE00000006	exon	69394682	69394972	-
GWHAAZE00000006	CDS	69399353	69399385	-
GWHAAZE00000006	CDS	69399154	69399231	-
GWHAAZE00000006	CDS	69398537	69398644	-
GWHAAZE00000006	CDS	69398222	69398284	-
GWHAAZE00000006	CDS	69397967	69398086	-
GWHAAZE00000006	CDS	69397553	69397666	-
GWHAAZE00000006	CDS	69396607	69396669	-
GWHAAZE00000006	CDS	69396216	69396518	-
GWHAAZE00000006	CDS	69395937	69396101	-
GWHAAZE00000006	CDS	69394682	69394972	-

Transcript Sequence
>GWHTAAZE022291 ATGGATGCCGAGAGATCACTCGCTCTTCTACAGTTTATGGCCGATGAGCGTCTTGTGCCTTCTCCCGAAGAGGAAGTCAAGAGGACATACGTCATTGATGAGCTCAAGCAGATAGTGATGAAATGGATTAAGAGGGTTGCTTACCAGCGCCGGTTACCAAGAAGTCATATCGGGGCTGCTTCTGCCACCATCTTAACTTATGGATCCTATGGTCTTGGAGTTCATAATGCAGAGTCAGATATCGATGCCTTATGCGTTGGCCCATACTTTGCAACTATGGCAACCGGAAGTATCAGAGATCCATTGTGTCAAGGATGCAAAGTTCCTTTAATGCGGTTTAAATTCGATGGTATCTCTGTTGATCTTCCATACGCTCAACTTAAAGTACCATCCATTCCTGAGAATGTGGACATGCTCAATCCATTTTTCCTGATGGACATTAATGAGACGAGCTGGAGAAGTCTCTCTGGAGTACGTGCCAATAAAAGCATCCTTCAGATTGTGCCAAATGTGGAGATATTCCAATCAGTGTTGCGATGTGTTAAATTATGGGCGAAAAGGCGAGGAGTGTATGGTAATTTACTTGGATTCTTTGGAGGGGTTCACTTGGCCATTCTTGTAGCATTTATTTGCCAAAGGCATCCAGATGCTAGCTTGGCTGCTCTGTTATCAATTTTCTTTAAGACGTTTGCCTTTTGGCCATGGCCCACACCTGTAATTTTACTAGATGGAATGATGCCACCAACTATACACAGTGAAACAAGGTTCTTGATGCCTATTCAATTACCCTGTAGCCCACATGAGTATTGCCATTCAAACATCACCAGGAGTACGTTCTACAGAATCAGAGCAGAGTTCCTTCGAGGACATGCTATGACTAAGGATCTCCTGAGGCCAGATTTTGATTGGAGCAGCATATTTGAGCATTTTTACTACTCCAGGAAATATGCACGGTTTATAAAAATATGCCTTTCTGCCTCAGACCAAGATGCACTAGGAGATTGGGCCGGATGGATCAAGTCTCGTTTCCGCTGTCTTCTTGTCAAAAGTGATTTCGTGGACATAAACTCTGTTGAGGAAGACTTTATGAAGAACATTAATAATGGATACCAAGGACCCCGGGGAGAGATAAGATTATCAGTTGTTCAAGCATCTCAATTCCCAAAGGAAGAGCACTTTGATATTGGTAGCAGTTCGCCCACAAAAGCTTACTGGAGGATTTCAAATTGCAATGAGCGAAAAGTACCTGTGTATTCAAGGCATATGCCCCAATACTTTGTAGGGTACTTGGCGACTAATGGAAATCTCAATCTTGAATACCCTATTGCTGGAGGGTAG

Network for GWHGAAZE022263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04928.18	PAP_central	2	308	4.60E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14376	PAP	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0043631	biological_process	RNA polyadenylation
GO:0031123	biological_process	RNA 3'-end processing
GO:0004652	molecular_function	polynucleotide adenylyltransferase activity
GO:0003723	molecular_function	RNA binding
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.195
	SRR3591706	second leaf	26.814
	SRR3591707	mature leaf	34.341
	SRR3591708	Shoot apex	28.466
	SRR3591709	Stem	56.255
	SRR3591710	White floral bud	37.227
	SRR3591711	White flower	51.522
	SRR3591712	Green floral bud	39.112
	SRR3591713	Yellow flower	63.823
SRP173429	SRR8316895	Juvenile bud stage	96.851
	SRR8316896	Juvenile bud stage	132.901
	SRR8316897	Juvenile bud stage	84.942
	SRR8316894	Third green stage	15.626
	SRR8316900	Third green stage	44.356
	SRR8316901	Third green stage	68.912
	SRR8316898	Complete white stage	25.627
	SRR8316899	Complete white stage	102.508
	SRR8316903	Complete white stage	39.745
	SRR8316902	Silver flowering stage	23.098
	SRR8316904	Silver flowering stage	23.942
	SRR8316905	Silver flowering stage	11.032
	SRR8316906	Gold flowering stage	41.697
	SRR8316907	Gold flowering stage	32.202
	SRR8316908	Gold flowering stage	35.940
SRP132670	SRR6706286	Control	18.512
	SRR6706287	Light intensity 50%	20.164
	SRR6706288	Light intensity 20%	23.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.947
	CNS0095593	Slightly white alabastrum(diploid) 2	94.315
	CNS0095594	Slightly white alabastrum(diploid) 3	78.656
	CNS0095595	Whole white alabastrum(diploid) 2	85.451
	CNS0095596	Whole white alabastrum(diploid) 3	22.115
	CNS0095597	Whole white alabastrum(diploid) 4	40.023
	CNS0095598	Silvery flower (diploied) 1	58.862
	CNS0095599	Silvery flower (diploied) 2	132.130
	CNS0095600	Silvery flower (diploied) 3	86.899
	CNS0095601	Golden flower (diploid) 1	99.176
	CNS0095602	Golden flower (diploid) 2	138.993
	CNS0095603	Golden flower (diploid) 3	131.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.360
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.294
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.315
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.461
	CNS0095610	Silvery flower (tetraploid) 1	42.362
	CNS0095611	Silvery flower (tetraploid) 2	49.162
	CNS0095612	Silvery flower (tetraploid) 3	35.558
	CNS0095613	Golden flower (tetraploid) 1	29.585
	CNS0095614	Golden flower (tetraploid) 2	39.908
	CNS0095615	Golden flower (tetraploid) 3	132.442
CRA001975	CRR073297	Stem 1	31.060
	CRR073298	Stem 2	29.113
	CRR073299	Stem 3	28.090
	CRR073300	Leaf 1	52.948
	CRR073301	Leaf 2	48.761
	CRR073302	Leaf 3	35.001
	CRR073303	Juvenile bud 1	49.386
	CRR073304	Juvenile bud 2	37.469
	CRR073305	Juvenile bud 3	52.636
	CRR073306	Third green 1	38.029
	CRR073307	Third green 2	45.727
	CRR073308	Third green 3	33.553
	CRR073309	Second white 1	24.831
	CRR073310	Second white 2	34.191
	CRR073311	Second white 3	33.176
	CRR073312	Silver flowering 1	47.725
	CRR073313	Silver flowering 2	43.289
	CRR073314	Silver flowering 3	37.881
	CRR073315	Gold flowering 1	18.440
	CRR073316	Gold flowering 2	38.503
	CRR073317	Gold flowering 3	21.650
	CRR073318	Tawny withering 1	31.039
	CRR073319	Tawny withering 2	78.820
	CRR073320	Tawny withering 3	28.724